Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103203 |
| Name | oriT_122262|unnamed  |
| Organism | Escherichia coli O55:H7 strain 122262 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_KX808482 (57110..57458 [+], 349 nt) |
| oriT length | 349 nt |
| IRs (inverted repeats) | 255..262, 271..278 (ACCGCTAG..CTAGCGGT) 192..198, 206..212 (TATAAAA..TTTTATA) 40..47, 50..57 (GCAAAAAC..GTTTTTGC) 4..11, 16..23 (TTGGTGGT..ACCACCAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 349 nt
>oriT_122262|unnamed
AGGTTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGTTTTATGAAAAATTAGTTTCTCTTACTCTCTTTATGATATTTAAAAAAGCGGTGTCGGCGCGGCTACAACAACGCACCGACACCGCTTTGTAGGGGTAGTACTGACTATTTTTATAAAAAACATTATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTCTTTATAGGATACCGCTAGGGGCGCTGCTAGCGGTGCGTCCCTGTTTGCATTATGAATTTTAGTGTTTCTAAATTAACTTTATTTTATGTTCAAAAAAGGTAATCT
AGGTTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGTTTTATGAAAAATTAGTTTCTCTTACTCTCTTTATGATATTTAAAAAAGCGGTGTCGGCGCGGCTACAACAACGCACCGACACCGCTTTGTAGGGGTAGTACTGACTATTTTTATAAAAAACATTATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTCTTTATAGGATACCGCTAGGGGCGCTGCTAGCGGTGCGTCCCTGTTTGCATTATGAATTTTAGTGTTTCTAAATTAACTTTATTTTATGTTCAAAAAAGGTAATCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 3646 | GenBank | NZ_KX808482 |
| Plasmid name | 122262|unnamed | Incompatibility group | IncFIB |
| Plasmid size | 66173 bp | Coordinate of oriT [Strand] | 57110..57458 [+] |
| Host baterium | Escherichia coli O55:H7 strain 122262 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | stcE, exeE, exeG, nleA/espI |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |