Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103111
Name   oriT_pPFS in_silico
Organism   Pseudomonas fragi strain A22
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_KX353854 (156..194 [-], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      6..11, 15..20  (CTTTGC..GCAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_pPFS
ACGATCTTTGCGAAGCAAAGTCTAGTGAGTACACTTCAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2332 GenBank   WP_172688313
Name   Mob_Pre_HTI24_RS00005_pPFS insolico UniProt ID   _
Length   300 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 300 a.a.        Molecular weight: 33327.07 Da        Isoelectric Point: 10.3666

>WP_172688313.1 MobV family relaxase [Pseudomonas fragi]
MSYAIMRAKKLASMGSVAASMQHCYRERTDEAMGKLRALLPEKRRKDAVLAVEYVMTASPEWFAQATPEQ
EQAFFQLSLQWLADKYGADRIVTASIHRDEITPHLSAFVVPLTQDRRLSAKEFIGSRDKMRADQTTYAAS
VADLGLERGIEGSKATHQTIQQHYAAIQRGVAPKAVVSPKSVEPRVLEKATFFDKARGRGDLVESPEMIA
ERLTKAINAGFAGTVAQASTAAQERRKAKEAQDTANAIRKRLEALQEPFKGLSKAQMAEVLQLASKLQEE
NTKKVSRQREQGRPRGGIER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(42-164)


  Protein structure



No available structure.




Host bacterium

ID   3554 GenBank   NZ_KX353854
Plasmid name   pPFS Incompatibility group   -
Plasmid size   2547 bp Coordinate of oriT [Strand]   156..194 [-]
Host baterium   Pseudomonas fragi strain A22

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -