Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   103100
Name   oriT_Drgb6 in_silico
Organism   Pectobacterium carotovorum
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_KT351737 (3887..3931 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_Drgb6
GCGCACCGTTTCTGAACAAAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2322 GenBank   WP_076914850
Name   MobA_MobL_HTG04_RS00015_Drgb6 insolico UniProt ID   A0A0N9MZD0
Length   371 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 371 a.a.        Molecular weight: 43182.81 Da        Isoelectric Point: 6.6754

>WP_076914850.1 MULTISPECIES: MobA/MobL family protein [Gammaproteobacteria]
MASYHLSVKTGGKGKAASHADYIAREGKYAREKDNDLEHQESGNMPAWAAHKPSEFWKAADTFERANGST
YREIEIALPRELTPTQRLELVRDFVQQEIGDRHAYQFAIHNPRAAIEGGEQPHAHIMFSERLNDGIERDP
QQYFKRANSKEPERGGAKKVRFGETPTERKAYLIAQRERWADLQNKHLERYQHIDRVDARSLKAQGIERE
PERHFGAGQVRQFEPAQLHAVIERREAERQAQHCRDECNSVIDVTTTLREALSERDNLTLKHEQTSEPQS
KATSDKAFDFEKESEKLTPLVNDALSEIQEEIDLQSLINDSMAEFQNIHQELVRQQERERLAEKQRQQEK
ERQRLAEQKRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure


Source ID Structure
AlphaFold DB A0A0N9MZD0


Host bacterium

ID   3543 GenBank   NZ_KT351737
Plasmid name   Drgb6 Incompatibility group   ColE10
Plasmid size   10631 bp Coordinate of oriT [Strand]   3887..3931 [+]
Host baterium   Pectobacterium carotovorum

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -