Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 103046 |
| Name | oriT_pYD786-4  |
| Organism | Escherichia coli strain YD786 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_KU254581 (13995..14527 [-], 533 nt) |
| oriT length | 533 nt |
| IRs (inverted repeats) | 458..463, 467..472 (CCAATG..CATTGG) 157..163, 165..171 (TTTATCA..TGATAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 533 nt
>oriT_pYD786-4
AGATCTATGGATGTTGAGAATGTAGTATGGTTATACTGCGATGCAGGATAGGGCAAACGCCGTAAAATGACGTCTTTGACGTTATTTTTCAGCGCTTGCCCGGTGACCTACAGTCGGTTCTTGTTGGGAGATTTTATGAAGTTTATAGTAAAGGATTTTATCAGTGATAAATATGCAAAGGCTATTAACATTTTAAATGATAACCTTAAAGAAAACTACTATGTTTTTTATGGTGTAAGGTTAAGTGAAATTCTTTTTCCTGCAAGTGATTATGGTACAGATGATTTTTTTAAGGAGTTTGAGGAAATAAACAACGTTACCTTGCCTTTAGTTGTTTTTGAAATAAATGAACGTGAACCTGTGATTGTAATTGGTTTTGATGAAATAAATGGTGCGATTCTTATAGAGAAATCCGGTATAAAGGTTTTAGTAATCGATAATCTATCGGCGTTGCTGACCAATGAAACATTGGGTGTCTTCTTCAAGTAACAGATCTAGCTGAAAATCGTCATCAAAACTGTGCACCTTATCTG
AGATCTATGGATGTTGAGAATGTAGTATGGTTATACTGCGATGCAGGATAGGGCAAACGCCGTAAAATGACGTCTTTGACGTTATTTTTCAGCGCTTGCCCGGTGACCTACAGTCGGTTCTTGTTGGGAGATTTTATGAAGTTTATAGTAAAGGATTTTATCAGTGATAAATATGCAAAGGCTATTAACATTTTAAATGATAACCTTAAAGAAAACTACTATGTTTTTTATGGTGTAAGGTTAAGTGAAATTCTTTTTCCTGCAAGTGATTATGGTACAGATGATTTTTTTAAGGAGTTTGAGGAAATAAACAACGTTACCTTGCCTTTAGTTGTTTTTGAAATAAATGAACGTGAACCTGTGATTGTAATTGGTTTTGATGAAATAAATGGTGCGATTCTTATAGAGAAATCCGGTATAAAGGTTTTAGTAATCGATAATCTATCGGCGTTGCTGACCAATGAAACATTGGGTGTCTTCTTCAAGTAACAGATCTAGCTGAAAATCGTCATCAAAACTGTGCACCTTATCTG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2277 | GenBank | WP_000130000 |
| Name | Replic_Relax_HTG67_RS00130_pYD786-4 |
UniProt ID | R4WML4 |
| Length | 101 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 101 a.a. Molecular weight: 11477.11 Da Isoelectric Point: 7.5204
>WP_000130000.1 MULTISPECIES: PadR family transcriptional regulator [Pseudomonadota]
MTDKDLYGGLIRLHILHHAAEEPVFGLGIIEELRRHGYEMSAGTVYPMLHGLEKKGYLTSRHERTGRRER
RVYDITEQGRTALADAKTKVKELFGELVEGG
MTDKDLYGGLIRLHILHHAAEEPVFGLGIIEELRRHGYEMSAGTVYPMLHGLEKKGYLTSRHERTGRRER
RVYDITEQGRTALADAKTKVKELFGELVEGG
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | R4WML4 |
Host bacterium
| ID | 3489 | GenBank | NZ_KU254581 |
| Plasmid name | pYD786-4 | Incompatibility group | IncX2 |
| Plasmid size | 25678 bp | Coordinate of oriT [Strand] | 13995..14527 [-] |
| Host baterium | Escherichia coli strain YD786 |
Cargo genes
| Drug resistance gene | mph(A), tet(A) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |