Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102987
• Name: oriT_pRIVM0677
• Organism: Staphylococcus aureus strain RIVM0677
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP013622 (2466..2563 [-], 98 nt)
• oriT length: 98 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 98 nt

>oriT_pRIVM0677
TCTGCTGAAACTTTAAATATGAGTGTGCCTAATTTCGTTAAGAAAAAGGCACAGGGTAGTCGATTAGTCGCACCTAAATTTGATAAAGCAACGCGACA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Rep_trans_AUK67_RS00005_pRIVM0677

• ID: 2241
• GenBank: WP_168445437
• Name: Rep_trans_AUK67_RS00005_pRIVM0677
• UniProt ID: _
• Length: 311 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 311 a.a.
• Molecular weight: 37467.68 Da
• Isoelectric Point: 9.1524

>WP_168445437.1 replication initiation factor domain-containing protein [Staphylococcus aureus]
MSKENHSNYLQNKDVDNFSKTGYSNSRLGVHSVHPQNPKLSFDAMTIVGNLSRDNAQKLSSFMSIEPQIR
LWDILQTKFKAKALQEKVYIEYDKVKADTWDRRNMRVEFNPNKLTHEEMIWLKQNIIDYMEDDGFTRIDL
AFDFEDDLSDYYAMTDKAVKKTIFYGRNGKPETKYFGVRNSNRFIRIYNKKQERKDNADVEVMSEHLWRV
EIELKRDMVDYWNDCFNDLHILKPDWTSPEKLNEQAMVYMLIHEEGKWGELNKRTKYKYKNLIKEISSID
LTDLMKLTLKANEKQLQKQIDFWQRKFRFWK

Protein domains

Predicted by InterproScan.

• Replication initiation factor (Rep_trans) (135-224)

Protein structure

No available structure.

Host bacterium

• ID: 3430
• GenBank: NZ_CP013622
• Plasmid name: pRIVM0677
• Incompatibility group: -
• Plasmid size: 4447 bp
• Coordinate of oriT [Strand]: 2466..2563 [-]
• Host baterium: Staphylococcus aureus strain RIVM0677

Cargo genes

• Drug resistance gene: str
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -