Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102976
• Name: oriT_pPC101
• Organism: Lactiplantibacillus plantarum strain PC101
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_KT247376 (533..560 [+], 28 nt)
• oriT length: 28 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 28 nt

>oriT_pPC101
TAAAGTATATTGGGCTATACCTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

Mob_Pre_HTF38_RS00015_pPC101

• ID: 2231
• GenBank: WP_172686719
• Name: Mob_Pre_HTF38_RS00015_pPC101
• UniProt ID: _
• Length: 363 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 363 a.a.
• Molecular weight: 41940.35 Da
• Isoelectric Point: 9.4040

>WP_172686719.1 MobV family relaxase [Lactiplantibacillus plantarum]
MSYLVANMQKLKADNLVGLGNHDQRRTQHHKNPDIDVDRSALNYDLVAGRTGHFKTDIEAYINEHKTSQR
AVRKDAVLVNEWIISSDSHFFADLTAADMRKYFETAKDYFAEKFGEENICYAIVHLDESTPHMHMGIVPF
DDEHKLSAKRVFNRTALRDVQDQLPAYLQQHGFNIQRGVQESERKSLTVPEYKAMRESIKQSQQKLAAVE
NETKQRQAKLKTYQATKFDVNSVKTKESRFHKRYVLVDRFDFDKLKQGASLTDTYFTETLSQRSDMDIQK
DQLIKAESKAMELDIENRRLQKLVGTLQGIVRSVDRFLQRKLGVGLPSEWLERAGLKEPSKKAPQRPQER
SEGQHDKLDGPSL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 3419
• GenBank: NZ_KT247376
• Plasmid name: pPC101
• Incompatibility group: -
• Plasmid size: 3496 bp
• Coordinate of oriT [Strand]: 533..560 [+]
• Host baterium: Lactiplantibacillus plantarum strain PC101

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -