Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102970 |
| Name | oriT_pICHIAU1  |
| Organism | Fluviibacter phosphoraccumulans strain ICHIAU1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP022346 (3626..3657 [+], 32 nt) |
| oriT length | 32 nt |
| IRs (inverted repeats) | 4..9, 13..18 (GCAAAC..GTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 32 nt
>oriT_pICHIAU1
CACGCAAACGAAGTTTGCATAAGTGCGCCCTT
CACGCAAACGAAGTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2226 | GenBank | WP_162071370 |
| Name | MobA_MobL_ICHIAU1_RS11895_pICHIAU1 |
UniProt ID | _ |
| Length | 554 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 554 a.a. Molecular weight: 63334.48 Da Isoelectric Point: 10.0589
>WP_162071370.1 MobQ family relaxase [Fluviibacter phosphoraccumulans]
MAIYHLSVKTISRSAGRSATAAAAYRAGVEILDARTGEVHDYRRKGGVEHSEIVLPKDAPDWARDRAALW
NAAEVAEVRKNSTVAREFEIALPSELSGEARRALAVDFAREIVGRHGCAVDVSIHEPGREGDSRNHHAHL
LLTTRRLGSEGFTEKTRELDQRQSGEVDYWRSRYAELQNERLMDAGLSVRVDHRSLKAQGVDREPTRHLG
VGAVGYERRTGQASRRRLTHEAEITERLQLAKEAGELARAGAVVDQTILDLSGDLERAKAEHRQQVSDKY
GLKAVAQAVERLNVPGPTGQEPAKKLTIANLYGVESAPKPEEKPEVVQMEQKPETTEAQVKSEHGWGVKI
AGLKPVSEQQPMPEIQEREEPKETRPMFDIQAYLQHVELSVDRWKKGQASKEDAARINKFADVYWKKRHK
IYEQIKRCSTKARRLWDRLNERLTEHHRRKPQKPTGMGAIFKQGDYKESFGRWQDKEIELDRRFRKIDRL
HSKFASMSWNDGWLKLADKKMGERFTERACLLHQSIERETQRRKVAAQNRLNEVELEPKRGPRR
MAIYHLSVKTISRSAGRSATAAAAYRAGVEILDARTGEVHDYRRKGGVEHSEIVLPKDAPDWARDRAALW
NAAEVAEVRKNSTVAREFEIALPSELSGEARRALAVDFAREIVGRHGCAVDVSIHEPGREGDSRNHHAHL
LLTTRRLGSEGFTEKTRELDQRQSGEVDYWRSRYAELQNERLMDAGLSVRVDHRSLKAQGVDREPTRHLG
VGAVGYERRTGQASRRRLTHEAEITERLQLAKEAGELARAGAVVDQTILDLSGDLERAKAEHRQQVSDKY
GLKAVAQAVERLNVPGPTGQEPAKKLTIANLYGVESAPKPEEKPEVVQMEQKPETTEAQVKSEHGWGVKI
AGLKPVSEQQPMPEIQEREEPKETRPMFDIQAYLQHVELSVDRWKKGQASKEDAARINKFADVYWKKRHK
IYEQIKRCSTKARRLWDRLNERLTEHHRRKPQKPTGMGAIFKQGDYKESFGRWQDKEIELDRRFRKIDRL
HSKFASMSWNDGWLKLADKKMGERFTERACLLHQSIERETQRRKVAAQNRLNEVELEPKRGPRR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 3413 | GenBank | NZ_AP022346 |
| Plasmid name | pICHIAU1 | Incompatibility group | - |
| Plasmid size | 16356 bp | Coordinate of oriT [Strand] | 3626..3657 [+] |
| Host baterium | Fluviibacter phosphoraccumulans strain ICHIAU1 |
Cargo genes
| Drug resistance gene | aph(6)-Id, aph(3'')-Ib |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |