Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102940
Name   oriT_p13C1065T-3 in_silico
Organism   Escherichia coli strain 13C1065T
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP019262 (78040..78323 [-], 284 nt)
oriT length   284 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 284 nt

>oriT_p13C1065T-3
GGTTATTGCTGCTTTCTGCCGATAACAGTGCAAGTTTTGCGATTTTTTTAAGCGCTTCACAGTTCGTTAGCAAGCTCAGTTTTTTTGATAAAATTCTGGTCAGTTTGTTTAAAAAGTGTTACAAGTAAGGCGAATGGTTGAATGGTTAGTTTTAAGACTCAAATCGGCAGTATTAAAATTCCAAAAGTAGCTTTTCATACTTCAAAAAACCAAACTTTAATTTCATGTAGAAGAGTTGTACTATTGTATTGACTCAAGGACAATCCGACATGTCAGAATCAGAT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2207 GenBank   WP_229436851
Name   TraI_2_BWI86_RS26955_p13C1065T-3 insolico UniProt ID   _
Length   543 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 543 a.a.        Molecular weight: 61940.31 Da        Isoelectric Point: 6.0939

>WP_229436851.1 MULTISPECIES: MobH family relaxase [Escherichia]
MNFRAIFLSMQRVLGIFSRRENDVVELIKQDPSSLSPFAQIVGDQKYTVPDHPNLEVLKFIEYPTRPAGI
QTFNEQSILSLYRDKLHSISMMLAISDGDIREDAFTFTNLVLKPLIEYIRWIHLLPASENHHHNGIGGLL
SHSLEVAMISLKNANHSELRPIGYQDEEVIRRKVYLYAAFICGLVHDAGKVYDIDIVSLNLSKTLTWAPS
SQSLLDWARENNVVEYEIHWRKRIHNQHNIWSSVFLERILDPVCMSFLDRVKKERVYAKMVTALNVYNDG
NDFLSKCVRTSDYYSTGTDLNVLRDPIMGLRSNDAAARAIGTIKHNFTSININNYKSKPMHLIIVNGEVY
LNENAFLDFVLSDFAAHKFNFPQGNAGKTVLVESLVQRGYVEPYDDERVVHYFIPGTYSENEIASIFRNG
IGKLEFYNLLKLRWIGLIFDSYKIPDSVPGLFSVNANKYFIYIDEQKTVTEYRRPVPGRESVTRVTDTVS
DAIEDTPQYRLKLVNGPDADSDNGKNSENTEDITESVKAPGADIATEVMTPTY

  Protein domains


Predicted by InterproScan.

Putative helicase (TraI_2)

(106-301)


  Protein structure



No available structure.




Host bacterium

ID   3383 GenBank   NZ_CP019262
Plasmid name   p13C1065T-3 Incompatibility group   IncFIB
Plasmid size   149653 bp Coordinate of oriT [Strand]   78040..78323 [-]
Host baterium   Escherichia coli strain 13C1065T

Cargo genes

Drug resistance gene   mph(A), dfrA1, ant(3'')-Ia, qacE, sul1, blaTEM-1B, tet(A), aph(6)-Id, aph(3'')-Ib, sul2, oqxB, oqxA
Virulence gene   -
Metal resistance gene   arsH, merE, merD, merA
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -