Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102935 |
| Name | oriT_p13P477T-11  |
| Organism | Escherichia coli strain 13P477T |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP021099 (2525..2560 [+], 36 nt) |
| oriT length | 36 nt |
| IRs (inverted repeats) | 4..11, 15..22 (GCAAACTC..GAGTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 36 nt
>oriT_p13P477T-11
CACGCAAACTCGAAGAGTTTGCATAAGTGCGCCCTT
CACGCAAACTCGAAGAGTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2204 | GenBank | WP_023139326 |
| Name | MobA_MobL_BWI89_RS28270_p13P477T-11 |
UniProt ID | _ |
| Length | 607 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 607 a.a. Molecular weight: 69115.42 Da Isoelectric Point: 10.6194
>WP_023139326.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIFHLSVKTISRSAGRSATAAIAYRTGSRIVDERTGITHDYTRKSGVEHSEIFLPQNSPGWASNRETLW
NAVEQKENRRNSTVAREFELAFPAELDGKQRLDLLREFCSSLVERHGMAVDAAIHAPGKEGDQRNYHAHV
LCSTRRLSEEGFKDKTRELDDFKSGEVNYWRSAWSEMTNRHLEKAGRSERIDHRSLEAQRESAISQGDSA
KAAELDRVPTIHIGYAAAQMEKRGIETERGNEHRQIILRNAEIQPLSRAIQLIENWRATHDNNSRAGHGS
IAPVPARDTGRDRRGVRTAQSNTGRAGAVPPPSARGRLRNLSELDMVRFGERSEMLLPGNVSRDVEHQRT
DRNQPLRRENTVTSKPKRPEIIRLEWQRLRRDKLTFVHDKAGRIAARGAAQVERQRQKISSHERQRPEQP
SGLIGMFKRSAYEQAASTWQTIKNGLDRRLVQLKNRLGFVRGYMRKSGAYEMSTPGERLADQLAAKENPI
LAGQIKSLNAQKNAEDMAAYRTRVQSRKQEKADMKLETIEELKQRGDARRDKADKAERAELEKASHQASL
QNETIGEETKELESGEKEKLSKRDQVLEKFKAKFERDKQNERGGRGR
MAIFHLSVKTISRSAGRSATAAIAYRTGSRIVDERTGITHDYTRKSGVEHSEIFLPQNSPGWASNRETLW
NAVEQKENRRNSTVAREFELAFPAELDGKQRLDLLREFCSSLVERHGMAVDAAIHAPGKEGDQRNYHAHV
LCSTRRLSEEGFKDKTRELDDFKSGEVNYWRSAWSEMTNRHLEKAGRSERIDHRSLEAQRESAISQGDSA
KAAELDRVPTIHIGYAAAQMEKRGIETERGNEHRQIILRNAEIQPLSRAIQLIENWRATHDNNSRAGHGS
IAPVPARDTGRDRRGVRTAQSNTGRAGAVPPPSARGRLRNLSELDMVRFGERSEMLLPGNVSRDVEHQRT
DRNQPLRRENTVTSKPKRPEIIRLEWQRLRRDKLTFVHDKAGRIAARGAAQVERQRQKISSHERQRPEQP
SGLIGMFKRSAYEQAASTWQTIKNGLDRRLVQLKNRLGFVRGYMRKSGAYEMSTPGERLADQLAAKENPI
LAGQIKSLNAQKNAEDMAAYRTRVQSRKQEKADMKLETIEELKQRGDARRDKADKAERAELEKASHQASL
QNETIGEETKELESGEKEKLSKRDQVLEKFKAKFERDKQNERGGRGR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 1884 | GenBank | WP_250645351 |
| Name | t4cp1_BWI89_RS30390_p13P477T-11 |
UniProt ID | _ |
| Length | 483 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 483 a.a. Molecular weight: 51517.59 Da Isoelectric Point: 7.1065
>WP_250645351.1 type IV secretory system conjugative DNA transfer family protein [Escherichia coli]
MHWQKKNSSLLGAGNILALFGGDLNYLYQNAGLVAPASADGLTDNVSQMLTEPDKQVKAAGIAQQLVYQT
RVRAQSFIQGVAQNAGNEAQKEYREQSDKIVEDKAHNFKGDSVEGYFGGFLARISQVYAPVLLFLIIVGI
IGALTARRVRLDAFTASVKAVMAAVVPAVALALMLIFMPFLPSWVLYTAALAGTFAIYSRSKQILGGLAS
RCGRFPTLASGLRWMGGFVSGIDADRKQETGAASVNPASHHTHGSSRWGTAAEMRENNHLLPTEKQAGFT
LARELSPPPGVDGKFCFTGHVVTVAPTGSGKGIGAVIPNLLTYQGSALVFDPKGENAEVTGRRRREMGQS
VHVIDPFGITSGIKESVNILDRLDVTSPDCVAESAVLAESLVVSEKGGDSNHFDESARTLLQGLMLHVSG
LPDESRRNLAELRRLITSDEENLLALLADMAASEDVASVSPPSGQHAHGDGRPGTRLSIVYRP
MHWQKKNSSLLGAGNILALFGGDLNYLYQNAGLVAPASADGLTDNVSQMLTEPDKQVKAAGIAQQLVYQT
RVRAQSFIQGVAQNAGNEAQKEYREQSDKIVEDKAHNFKGDSVEGYFGGFLARISQVYAPVLLFLIIVGI
IGALTARRVRLDAFTASVKAVMAAVVPAVALALMLIFMPFLPSWVLYTAALAGTFAIYSRSKQILGGLAS
RCGRFPTLASGLRWMGGFVSGIDADRKQETGAASVNPASHHTHGSSRWGTAAEMRENNHLLPTEKQAGFT
LARELSPPPGVDGKFCFTGHVVTVAPTGSGKGIGAVIPNLLTYQGSALVFDPKGENAEVTGRRRREMGQS
VHVIDPFGITSGIKESVNILDRLDVTSPDCVAESAVLAESLVVSEKGGDSNHFDESARTLLQGLMLHVSG
LPDESRRNLAELRRLITSDEENLLALLADMAASEDVASVSPPSGQHAHGDGRPGTRLSIVYRP
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 3378 | GenBank | NZ_CP021099 |
| Plasmid name | p13P477T-11 | Incompatibility group | - |
| Plasmid size | 6032 bp | Coordinate of oriT [Strand] | 2525..2560 [+] |
| Host baterium | Escherichia coli strain 13P477T |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |