Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102924 |
| Name | oriT_p13C1079T-1  |
| Organism | Escherichia coli strain 13C1079T |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP019268 (117395..117746 [+], 352 nt) |
| oriT length | 352 nt |
| IRs (inverted repeats) | 255..262, 271..278 (ACCGCTAG..CTAGCGGT) 192..198, 206..212 (TATAAAA..TTTTATA) 40..47, 50..57 (GCAAAAAC..GTTTTTGC) 4..11, 16..23 (TTGGTGGT..ACCACCAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 352 nt
>oriT_p13C1079T-1
AGGTTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGAAAAATTAGTTTCTCTTACTCTCTTTATGATATTTAAAAAAGCGGTGTCGGCGCGGCTACAACAACGCGCCGACACCGCTTTGTAGGGGTGGTACTGACTATTTTTATAAAAAACATTATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTATAGGATACCGCTAGGGGCGCTGCTAGCGGTGCGTCCCTGTTTGCATTATGAATTTTAGTGTTTCGAAATTAACTTTATTTTATGTTCAAAAAAGGTAATCTCTA
AGGTTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGAAAAATTAGTTTCTCTTACTCTCTTTATGATATTTAAAAAAGCGGTGTCGGCGCGGCTACAACAACGCGCCGACACCGCTTTGTAGGGGTGGTACTGACTATTTTTATAAAAAACATTATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTATAGGATACCGCTAGGGGCGCTGCTAGCGGTGCGTCCCTGTTTGCATTATGAATTTTAGTGTTTCGAAATTAACTTTATTTTATGTTCAAAAAAGGTAATCTCTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 3367 | GenBank | NZ_CP019268 |
| Plasmid name | p13C1079T-1 | Incompatibility group | IncFIC |
| Plasmid size | 125272 bp | Coordinate of oriT [Strand] | 117395..117746 [+] |
| Host baterium | Escherichia coli strain 13C1079T |
Cargo genes
| Drug resistance gene | aph(3')-Ia, aph(6)-Id, aph(3'')-Ib, sul2, catA1, tet(B), blaTEM-1B, oqxB, oqxA, sitABCD |
| Virulence gene | iroN, iroE, iroD, iroC, iroB, iucA, iucB, iucC, iutA |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |