Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102913 |
| Name | oriT_FDAARGOS_90|unnamed3  |
| Organism | Shigella sonnei strain FDAARGOS_90 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP014098 (6382..6556 [+], 175 nt) |
| oriT length | 175 nt |
| IRs (inverted repeats) | 101..106, 120..125 (ACAATC..GATTGT) |
| Location of nic site | 65..66 |
| Conserved sequence flanking the nic site |
ACTGGCATAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 175 nt
>oriT_FDAARGOS_90|unnamed3
GTGACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTGCAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTTCATTTCGATTGTGTGCGGTCTGCGACGCTAAAAGAAAACGGCAAAAAGGCATTACGGCAGAA
GTGACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTGCAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTTCATTTCGATTGTGTGCGGTCTGCGACGCTAAAAGAAAACGGCAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 3356 | GenBank | NZ_CP014098 |
| Plasmid name | FDAARGOS_90|unnamed3 | Incompatibility group | Col156 |
| Plasmid size | 8141 bp | Coordinate of oriT [Strand] | 6382..6556 [+] |
| Host baterium | Shigella sonnei strain FDAARGOS_90 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |