Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102905 |
| Name | oriT_pFAM22155  |
| Organism | Lactobacillus helveticus strain FAM22155 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP015499 (1622..1758 [+], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_pFAM22155
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTAAGGTTTTATGTGGTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTAAGGTTTTATGTGGTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2183 | GenBank | WP_101812871 |
| Name | Relaxase_Lh22155_RS11455_pFAM22155 |
UniProt ID | _ |
| Length | 410 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 410 a.a. Molecular weight: 47665.43 Da Isoelectric Point: 9.2899
>WP_101812871.1 relaxase/mobilization nuclease domain-containing protein [Lactobacillus helveticus]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
KINKSLQDASVSSYKAFKERLSDNGVILSERGQTFSYAFLDANNKQRRAREARLGSDFGRETILHELEKR
TRQNEFSAFEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIKQLAGRVPELTQ
RVTRKLKQTKEKILDDFERRFSKDMKNYEQEQQKILEKQANRDVQSEKKPTKDHDRGISR
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
KINKSLQDASVSSYKAFKERLSDNGVILSERGQTFSYAFLDANNKQRRAREARLGSDFGRETILHELEKR
TRQNEFSAFEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIKQLAGRVPELTQ
RVTRKLKQTKEKILDDFERRFSKDMKNYEQEQQKILEKQANRDVQSEKKPTKDHDRGISR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 3348 | GenBank | NZ_CP015499 |
| Plasmid name | pFAM22155 | Incompatibility group | - |
| Plasmid size | 7514 bp | Coordinate of oriT [Strand] | 1622..1758 [+] |
| Host baterium | Lactobacillus helveticus strain FAM22155 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |