Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102886 |
| Name | oriT_pDSJ01  |
| Organism | Pantoea stewartii subsp. stewartii DC283 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP017582 (498..557 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pDSJ01
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2166 | GenBank | WP_167387068 |
| Name | Relaxase_DSJ_RS27640_pDSJ01 |
UniProt ID | _ |
| Length | 186 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 186 a.a. Molecular weight: 20750.68 Da Isoelectric Point: 9.6032
>WP_167387068.1 relaxase/mobilization nuclease domain-containing protein [Pantoea stewartii]
MIVKFHPRGRGGGAGPVDYLLGKDLQREGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALARPGS
MIVKFHPRGRGGGAGPVDYLLGKDLQREGASVLQGKPEEVRELIDASPYAKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHRDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALARPGS
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 874 | GenBank | WP_151161160 |
| Name | WP_151161160_pDSJ01 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11771.49 Da Isoelectric Point: 7.8963
>WP_151161160.1 MobC family plasmid mobilization relaxosome protein [Pantoea stewartii]
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSLSPALLRQLAGMGNNLNQIARQVNSG
GGSGHDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSLSPALLRQLAGMGNNLNQIARQVNSG
GGSGHDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
| ID | 875 | GenBank | WP_141119429 |
| Name | WP_141119429_pDSJ01 |
UniProt ID | _ |
| Length | 161 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 161 a.a. Molecular weight: 18088.72 Da Isoelectric Point: 10.0592
>WP_141119429.1 MbeB family mobilization protein [Pantoea stewartii]
MNSLLTLAKDLEQKSKVQQQSTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMVSQTWLTIVLVSVLLIASSAAILWWQSQQILDNYTTIREQKSTQAMLSERNSGVQLSTCGDQRRRCV
RVNPEAGRFGEDSSWMILAGK
MNSLLTLAKDLEQKSKVQQQSTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMVSQTWLTIVLVSVLLIASSAAILWWQSQQILDNYTTIREQKSTQAMLSERNSGVQLSTCGDQRRRCV
RVNPEAGRFGEDSSWMILAGK
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 3329 | GenBank | NZ_CP017582 |
| Plasmid name | pDSJ01 | Incompatibility group | Col440II |
| Plasmid size | 4277 bp | Coordinate of oriT [Strand] | 498..557 [-] |
| Host baterium | Pantoea stewartii subsp. stewartii DC283 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |