Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102878
• Name: oriT_SPU_B003|unnamed5
• Organism: Ketogulonicigenium robustum strain SPU_B003
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP019942 (77..100 [+], 24 nt)
• oriT length: 24 nt
• IRs (inverted repeats): 2..7, 19..24 (CCCCCC..GGGGGG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 24 nt

>oriT_SPU_B003|unnamed5
ACCCCCCACATGCTAACAGGGGGG

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_BVG79_RS13355_SPU_B003|unnamed5

• ID: 2156
• GenBank: WP_198167946
• Name: MobA_MobL_BVG79_RS13355_SPU_B003|unnamed5
• UniProt ID: _
• Length: 326 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 326 a.a.
• Molecular weight: 35160.10 Da
• Isoelectric Point: 7.7418

>WP_198167946.1 MobQ family relaxase [Ketogulonicigenium robustum]
MAIYHLSASIIGRSDGRSAVAASAYRAGADMTDPDTGTRHDYTRKRGVRATFMELPEGAPDWATDRPSLW
NAVHAKETRKNSRLSREIRVALPAELDAEAQARLVRTWARDHLAAAGIVADIAIHEPSREGDDRNTHAHI
MTTLRRFDGATVDGWAKGAARDLNDKAFLENLRASWETAQNAALEAAGSTARVDHRTLAAQHEDALAAGD
DLLAAVLNRPPEPHLGVSAQAIDRRAGRPVSNRGRALAEVRETRTRLMTAYDTARRAAVFIATTTAGLVD
RVSGARSETGHPIARMFGLGRHAATVADTVPEPSRPSPDDDTPSPS

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-205)

Protein structure

No available structure.

Host bacterium

• ID: 3321
• GenBank: NZ_CP019942
• Plasmid name: SPU_B003|unnamed5
• Incompatibility group: -
• Plasmid size: 4211 bp
• Coordinate of oriT [Strand]: 77..100 [+]
• Host baterium: Ketogulonicigenium robustum strain SPU_B003

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -