Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102872
Name   oriT_N1-504|unnamed in_silico
Organism   Clostridium saccharoperbutylacetonicum strain N1-504
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP016088 (1716..1742 [+], 27 nt)
oriT length   27 nt
IRs (inverted repeats)      4..12, 19..27  (TAAAGTATA..TATACTTTA)
Location of nic site      17..18
Conserved sequence flanking the
  nic site    		  GTGAGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 27 nt

>oriT_N1-504|unnamed
ATGTAAAGTATAGTGAGTTATACTTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2148 GenBank   WP_077366831
Name   Mob_Pre_CLSAP_RS27660_N1-504|unnamed insolico UniProt ID   _
Length   379 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 379 a.a.        Molecular weight: 44043.30 Da        Isoelectric Point: 9.9286

>WP_077366831.1 MobV family relaxase [Clostridium saccharoperbutylacetonicum]
MSHLVCHMGKYTRGNVVGLQKHNQRENKNYGNENIDLSKSHLNYDLQNQESIKYLNKIDQIIKENRTSDK
AVRKDAIVYVDTVVGSDKKFFKKLSPEDTRRFFEKVYEYLQNKVGEKNVVSAVVHMDETKGIGGSPHMHF
SFVPMNEDGTLSAKKKINRNFLREIQDEFPRYMKGYGFNVERGMENSTKKHLEPLEFKKQELKKDIENAK
QEQERFEKKYSNFKESIKTRAENLQKTSESLSKLEEHTKGVLGKLDKIQVKKGLFGDKLTISEQDYSILV
SLAKAGEGKLIENLQLRSKIGDLTQKLSKLDAINNEFQRLKGIELKHFELQRKYRNLNISFERVEKAINN
LDLVEPVNKEIQSVKIAEMSISKSFDIER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-199)


  Protein structure



No available structure.




Host bacterium

ID   3315 GenBank   NZ_CP016088
Plasmid name   N1-504|unnamed Incompatibility group   -
Plasmid size   2936 bp Coordinate of oriT [Strand]   1716..1742 [+]
Host baterium   Clostridium saccharoperbutylacetonicum strain N1-504

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -