Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102863 |
| Name | oriT_pPLP1  |
| Organism | Paenibacillus larvae subsp. pulvifaciens strain CCM 38 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP020328 (53247..53277 [-], 31 nt) |
| oriT length | 31 nt |
| IRs (inverted repeats) | 1..7, 11..17 (ACATTGC..GCAATGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 31 nt
>oriT_pPLP1
ACATTGCGAAGCAATGTATAAGTGCGCCCTT
ACATTGCGAAGCAATGTATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 2138 | GenBank | WP_149867823 |
| Name | MobA_MobL_B5S25_RS22755_pPLP1 |
UniProt ID | _ |
| Length | 224 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 224 a.a. Molecular weight: 26403.84 Da Isoelectric Point: 8.9744
>WP_149867823.1 MobQ family relaxase [Paenibacillus larvae]
MAIYHFSMQVAKRSNGSSSIAMAAYRSGEKLFEERTGETKHYKRKVQPETMILAPKHAPSWVQNRNRLWN
EVEKAEKRVDAQLCREFNLALPKELNKEEQRKLIHDFCKEQLVDRGMIADIAIHRDDEQNPHAHVMLTMR
DIKDDGFGKKNRDWNDKELMKSWREEWANYANRSLERAGFSERIDHRSLAEQGIDRIPTIHEGPKVREME
ERGVTTDRGTFREK
MAIYHFSMQVAKRSNGSSSIAMAAYRSGEKLFEERTGETKHYKRKVQPETMILAPKHAPSWVQNRNRLWN
EVEKAEKRVDAQLCREFNLALPKELNKEEQRKLIHDFCKEQLVDRGMIADIAIHRDDEQNPHAHVMLTMR
DIKDDGFGKKNRDWNDKELMKSWREEWANYANRSLERAGFSERIDHRSLAEQGIDRIPTIHEGPKVREME
ERGVTTDRGTFREK
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 1803 | GenBank | WP_196220341 |
| Name | t4cp2_B5S25_RS22760_pPLP1 |
UniProt ID | _ |
| Length | 443 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 443 a.a. Molecular weight: 49944.82 Da Isoelectric Point: 8.2992
>WP_196220341.1 VirD4-like conjugal transfer protein, CD1115 family [Paenibacillus larvae]
MRIKILKIVIALAFLFLIDLYVIALLAIYITNQTLADNIMDYVEHPFFTMSNVLSPAAEGIEYDIHKNWL
NLQVVYLGLIVLAAMKLFFKRNTSAKDASDYGAHGTARWANDSEIKSWWHHPIDIPGLFLGKDEKKYCIH
PESSELNQHAIVFGGSGTGKSRSVIIPNILKAIREGKSIVVTDTKGTVYNQTANMLRKKGYAIRVLNYLK
PKQSSCYNRLDFVKDMSDAIKLSNTIIENSSNRHASSDEMWRNAEQSYITACILYVKSVRPPSEQHMSSV
LAFGVWGAGNPELMDFLFSQLPYSHPAKQMYNIFRIAEDKTRTGILIGFASRLQVFLDPGIAQMWSKSDF
DLKKIGLEKTALFLLISDRDTTYKMPLALTWLDYFKILLDEADGQPDGVLPIKVKCLMDECANIGTINNF
EQITSTARSRGVEIVPIFQSSLS
MRIKILKIVIALAFLFLIDLYVIALLAIYITNQTLADNIMDYVEHPFFTMSNVLSPAAEGIEYDIHKNWL
NLQVVYLGLIVLAAMKLFFKRNTSAKDASDYGAHGTARWANDSEIKSWWHHPIDIPGLFLGKDEKKYCIH
PESSELNQHAIVFGGSGTGKSRSVIIPNILKAIREGKSIVVTDTKGTVYNQTANMLRKKGYAIRVLNYLK
PKQSSCYNRLDFVKDMSDAIKLSNTIIENSSNRHASSDEMWRNAEQSYITACILYVKSVRPPSEQHMSSV
LAFGVWGAGNPELMDFLFSQLPYSHPAKQMYNIFRIAEDKTRTGILIGFASRLQVFLDPGIAQMWSKSDF
DLKKIGLEKTALFLLISDRDTTYKMPLALTWLDYFKILLDEADGQPDGVLPIKVKCLMDECANIGTINNF
EQITSTARSRGVEIVPIFQSSLS
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 3306 | GenBank | NZ_CP020328 |
| Plasmid name | pPLP1 | Incompatibility group | - |
| Plasmid size | 60855 bp | Coordinate of oriT [Strand] | 53247..53277 [-] |
| Host baterium | Paenibacillus larvae subsp. pulvifaciens strain CCM 38 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |