Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102853
Name   oriT_pSR04 in_silico
Organism   Staphylococcus aureus strain SR434
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP019567 (3043..3061 [-], 19 nt)
oriT length   19 nt
IRs (inverted repeats)     _
Location of nic site      12..13
Conserved sequence flanking the
  nic site    		  GTGCGCCCTT
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 19 nt

>oriT_pSR04
CGCATAAGTGCGCCCTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2125 GenBank   WP_060554450
Name   Rep_trans_BZP34_RS14855_pSR04 insolico UniProt ID   _
Length   311 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 311 a.a.        Molecular weight: 37379.56 Da        Isoelectric Point: 8.5508

>WP_060554450.1 MULTISPECIES: replication initiation factor domain-containing protein [Bacillales]
MSRENYSKYLQNKDSDILHSTGYSNSRLGVHSVHPQNPKLSFDAMTIVGNLSRDNAQKLSSFMSIEPQIR
LWDILQTKFKAKALQEKVYIEYDKVKADTWDRRNMRVEFNPNKLTHEEMLWLKQNIINYMEDDGFTRIDL
AFDFEDDLSNYYAMTDKAVKKTVFYGRDGKPETKYFGVRDSDRFIRIYNKKQERKDNADVEVMSDHLWRV
EIELKRDMVDYWNDCFNDLHILKPDWTSPEKLNEQAMVYMLIHEEGKWGELNKRTKYKYKNLIKEISPVD
LTELMKSTLKENEKQLQKQIEFWQTKRKKLF

  Protein domains


Predicted by InterproScan.

Replication initiation factor (Rep_trans)

(135-222)


  Protein structure



No available structure.




Host bacterium

ID   3296 GenBank   NZ_CP019567
Plasmid name   pSR04 Incompatibility group   -
Plasmid size   4817 bp Coordinate of oriT [Strand]   3043..3061 [-]
Host baterium   Staphylococcus aureus strain SR434

Cargo genes

Drug resistance gene   lnu(A)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -