Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102836
Name   oriT_pWIKIM01 in_silico
Organism   Companilactobacillus allii strain WiKim39
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP019324 (2739..2776 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..7, 19..25  (ACACAAC..GTTGTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pWIKIM01
ACACAACCAACTTTAGTTGTTGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2106 GenBank   WP_076619041
Name   MobA_MobL_BTM29_RS12540_pWIKIM01 insolico UniProt ID   A0A1P8Q6F2
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80863.17 Da        Isoelectric Point: 8.9127

>WP_076619041.1 MobQ family relaxase [Companilactobacillus allii]
MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIP
DRISEKSFIEEGIDDTPTQHEGINSKRHERKEFNQQVKDYRKTKASYKNNQEKVINRGHLDSLSKHFSFN
EKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYHEVLK
RAFPNGDLDDLSLVKQEQAYTAVMYYDPTLKPLKVETMEQWQANPPQVFSTQEHQLGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKVDPTIKNSQIEKIQKQLKEQQDKDDQYRKANIGHYQPLNYKPVSPDY
YLKTAFSNAIMTALYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure


Source ID Structure
AlphaFold DB A0A1P8Q6F2


Host bacterium

ID   3279 GenBank   NZ_CP019324
Plasmid name   pWIKIM01 Incompatibility group   -
Plasmid size   28011 bp Coordinate of oriT [Strand]   2739..2776 [-]
Host baterium   Companilactobacillus allii strain WiKim39

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21