Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   102831
Name   oriT_pKp_Goe_024-4 in_silico
Organism   Klebsiella pneumoniae strain Kp_Goe_827024
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP018705 (10019..10117 [+], 99 nt)
oriT length   99 nt
IRs (inverted repeats)      77..82, 89..94  (AAAAAA..TTTTTT)
 77..82, 88..93  (AAAAAA..TTTTTT)
 31..38, 41..48  (AGCGTGAT..ATCACGCT)
 17..23, 35..41  (TAAATCA..TGATTTA)
Location of nic site      59..60
Conserved sequence flanking the
  nic site  
 
 GGTGTATAGC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 99 nt

>oriT_pKp_Goe_024-4
TTTGTTTTTTTTCTTTTAAATCAGTGCGATAGCGTGATTTATCACGCTGCGTTAGGTGTATAGCAGGTTAAGGGATAAAAAATCATCTTTTTTTGGTAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   3274 GenBank   NZ_CP018705
Plasmid name   pKp_Goe_024-4 Incompatibility group   IncR
Plasmid size   61010 bp Coordinate of oriT [Strand]   10019..10117 [+]
Host baterium   Klebsiella pneumoniae strain Kp_Goe_827024

Cargo genes


Drug resistance gene   blaCTX-M-15, aph(6)-Id, aph(3'')-Ib, tet(A), dfrA1, qacE, sul1, qnrS1, blaTEM-1B
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -