Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102802
Name   oriT_pFAM21731.1 in_silico
Organism   Lentilactobacillus parabuchneri strain FAM21731
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP018797 (54458..54495 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..7, 19..25  (ACACAAC..GTTGTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pFAM21731.1
ACACAACCAACTTTAGTTGTTGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2076 GenBank   WP_075141387
Name   MobA_MobL_FAM21731_RS12730_pFAM21731.1 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80586.00 Da        Isoelectric Point: 9.2780

>WP_075141387.1 MobQ family relaxase [Lentilactobacillus parabuchneri]
MAIFHMSFSNISAGKGRSAIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDRKKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKKLLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKINQWRHNWAVSVNQVLEQKNIP
DRISEKSFIEEGIDDTPTQHEGINSKRHERKEFNQQVKNYRKSKAGYKNNQEKVINRGHLDSLSKHFSFN
EKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLAFTKRPYVGFKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIKTQYHEVLK
RAFPKGDLDELPMTKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPEY
YLKTAFSDAIMAALYARDEDYQGQRQAQGLKEAEWEMTKKQRQHQTRNRHEDGDMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   3245 GenBank   NZ_CP018797
Plasmid name   pFAM21731.1 Incompatibility group   -
Plasmid size   58093 bp Coordinate of oriT [Strand]   54458..54495 [+]
Host baterium   Lentilactobacillus parabuchneri strain FAM21731

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21