Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102800
Name   oriT_LTGPAF-6F|unnamed2 in_silico
Organism   Klebsiella sp. LTGPAF-6F
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP017452 (48679..48760 [+], 82 nt)
oriT length   82 nt
IRs (inverted repeats)      27..32, 35..40  (GCCACC..GGTGGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 82 nt

>oriT_LTGPAF-6F|unnamed2
CGGGACAGGATATGTTTTGTATTACCGCCACCACGGTGGCAGCAATCCAAAACTCCTGGTCAGGGCGAAGCCCCGACACCCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2073 GenBank   WP_064357930
Name   Relaxase_BJF97_RS31800_LTGPAF-6F|unnamed2 insolico UniProt ID   _
Length   642 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 642 a.a.        Molecular weight: 74304.29 Da        Isoelectric Point: 8.8672

>WP_064357930.1 MULTISPECIES: TraI/MobA(P) family conjugative relaxase [Enterobacterales]
MNAIIPPKRRDKKSSFVQLVAYVSVRDDVPLKDELKEDQRFQRPSRSRQAIFDRLVDYMNRSEGTITEQI
TDMSPEGDVRCSVDGVICQHNLMSVETAAMEMNSIAMQNLHVKDAVYHYILSWQEDENPSDDQVFDSVKY
SLKRLGMEENQYVAGIHRDTDNLHVHVAANRVHPVSYRAANVWNDADKLQRTCRELELKHGFKVDNGSWV
RDADNNIVRARKGYRNAPRSARQLEHFSDKESLHHFAVQHVRKPVNAMFREKNASWEKLHQVMNDAGLML
ETSGKGLIVRDVCGDEKLAVKSSRVHPSMTLSRLEPALGTFVPSPRSAEMVKQSVQTPYSDKLHVRDRGA
RAKRRQARADARIDLRERYGKYRNAWKKPDLHAAERFRAVSAAFKEQKTHIRDNEKDAHMRKLMYHIVEF
EREKSMAALRIALKAERQKLYDEGMMRPLTYRAWTEQQALHGDQAALSQLRGWSYRQNRKNRTPQASENI
IYCAPADDTSLLKADGYEARLHRDGAVVYSRQGQDAIIDRGDRVEVINPYDDGDLNTRIAVDMVAWKSGE
RVEFSRDGCFAYAAGDAVAAHNLHHRDSIIVPSDREQYDYTREKFNQLKGRYTDSEREALRQQYDERYYD
DVRNNDDSSYKP

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(52-310)


  Protein structure



No available structure.




Host bacterium

ID   3243 GenBank   NZ_CP017452
Plasmid name   LTGPAF-6F|unnamed2 Incompatibility group   -
Plasmid size   89552 bp Coordinate of oriT [Strand]   48679..48760 [+]
Host baterium   Klebsiella sp. LTGPAF-6F

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -