Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102794
Name   oriT_MA067296|unnamed1 in_silico
Organism   Francisella sp. MA067296
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP016929 (3251..3272 [+], 22 nt)
oriT length   22 nt
IRs (inverted repeats)      3..9, 16..22  (AAGTATA..TATACTT)
Location of nic site      14..15
Conserved sequence flanking the
  nic site    		  GTGAGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 22 nt

>oriT_MA067296|unnamed1
TAAAGTATAGTGAGTTATACTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   2066 GenBank   WP_071628381
Name   Mob_Pre_BBG19_RS00005_MA067296|unnamed1 insolico UniProt ID   _
Length   368 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 368 a.a.        Molecular weight: 43048.53 Da        Isoelectric Point: 10.0076

>WP_071628381.1 MobV family relaxase [Francisella sp. MA067296]
MSKLVCHMGKYSRGNVFGIQKHNQRENKNYSNENVDLKKTHLNYDLVNDSTIKYLNRVDEIIKKNRTNTY
RAVRKDAVVFVDTVVSSDKEFFNNLSPQETRRFFEESYKYLGSKVGEDNIVAAKVHMDENTPHMHFSFVP
MNEDGSLSAKKKINRNFLREIQDEFPKVLKNQGFDIERGMEKALKKHLEPLEFKKEQIKKDQIEIDKKIL
ENQKKFEIVENVAKGLSKIEEQTKGLLDKLEKVQVKRIPLSRNYSISAEDYSILISLAKIGESKIVKNIQ
LESRIAKLENKLEKNELDEEITKAKLKRLNDVEGKYLELQKRHKNLKNVFQSFEGALKELGIIDKVIDKM
ESIRLAEKTRKRSLDIER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(2-195)


  Protein structure



No available structure.




Host bacterium

ID   3237 GenBank   NZ_CP016929
Plasmid name   MA067296|unnamed1 Incompatibility group   -
Plasmid size   3403 bp Coordinate of oriT [Strand]   3251..3272 [+]
Host baterium   Francisella sp. MA067296

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -