Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102718
Name   oriT_LZ227p3 in_silico
Organism   Lactiplantibacillus plantarum strain LZ227
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP015861 (10109..10129 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_LZ227p3
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1999 GenBank   WP_064578755
Name   MobA_MobL_A8704_RS16030_LZ227p3 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80477.87 Da        Isoelectric Point: 9.1467

>WP_064578755.1 MULTISPECIES: MobQ family relaxase [Lactobacillaceae]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDQEGRHYFYARSVIPESFILTPKNAPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKMYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
DRISEKSFTEQGIDDTPTQHEGINSKRYERKEFNQQVKNYRKAKASYKNNQEKAINRGHLDSLSEHFSFN
EKRVVNELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETESEQTVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGFKLL
MQQEKETKIDLKYTLMIHSDSLESLEHVDKGLLEKYSPAEQQTITRAVKDLRTIIAVKQVIQTQYHEVLK
RAFPNGDLDDLSLVRQEQAYTAVMYYDPTLKPLKVETMAQWQENPPRVFSTQEHQLGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKVDPTIKNSQIEKIQKQLKEQQAKDDQYRKSQLAHYQPLNYKPVSPNY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMAKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   3161 GenBank   NZ_CP015861
Plasmid name   LZ227p3 Incompatibility group   -
Plasmid size   35461 bp Coordinate of oriT [Strand]   10109..10129 [-]
Host baterium   Lactiplantibacillus plantarum strain LZ227

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -