Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102713 |
| Name | oriT_pV521  |
| Organism | Staphylococcus aureus strain V521 isolate Sequencing |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP013958 (18465..18656 [+], 192 nt) |
| oriT length | 192 nt |
| IRs (inverted repeats) | 135..141, 145..151 (GTCTGGC..GCCAGAC) 24..29, 41..46 (AAAAAA..TTTTTT) 4..11, 23..30 (CTTTTTTA..TAAAAAAG) 16..21, 24..29 (TTTTTT..AAAAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 192 nt
>oriT_pV521
TGTCTTTTTTATTGATTTTTTGTAAAAAAGTACTGTCTTATTTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTGGAATGTCTGGCTTTGCCAGACCTATTATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTA
TGTCTTTTTTATTGATTTTTTGTAAAAAAGTACTGTCTTATTTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTGGAATGTCTGGCTTTGCCAGACCTATTATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 3156 | GenBank | NZ_CP013958 |
| Plasmid name | pV521 | Incompatibility group | - |
| Plasmid size | 28723 bp | Coordinate of oriT [Strand] | 18465..18656 [+] |
| Host baterium | Staphylococcus aureus strain V521 isolate Sequencing |
Cargo genes
| Drug resistance gene | qacA |
| Virulence gene | - |
| Metal resistance gene | cadC, merR, merT, merA, merB |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |