Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102700
Name   oriT_FWSEC0348|unnamed2 in_silico
Organism   Escherichia coli strain FWSEC0348
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_RRLY01000080 (996..1171 [+], 176 nt)
oriT length   176 nt
IRs (inverted repeats)      102..107, 121..126  (ACAATC..GATTGT)
Location of nic site      66..67
Conserved sequence flanking the
  nic site    		  ACTGGCATAA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 176 nt

>oriT_FWSEC0348|unnamed2
TGTGACTCCGTGCGCGGTGAAAAATCGCATTTTATCGCGTCACTGGTAGTTGCAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTTCGTTTCGATTGTGTGCGGTCTGCGACGCTAAAAGAAAACGGCAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1988 GenBank   WP_024224537
Name   mobQ_C9124_RS24910_FWSEC0348|unnamed2 insolico UniProt ID   _
Length   739 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 739 a.a.        Molecular weight: 84322.58 Da        Isoelectric Point: 8.0913

>WP_024224537.1 MobQ family relaxase [Escherichia coli]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAARETVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFLAMSGKVNDIEREGNALLKEQAILEKEMTGLKKARPVASLLSEIPLMTWA
EPEYRKRQLRFWKLGKQIESLRRTYRAVKEQDIPARRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSLGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDITADAVPEQLMPVVFSREGNSRTLNLLLCKGPEEMLVGFVRREG
GFCPVLVLPSPDYSHLIVSTITENGVCLAGYGEAINHDEDTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHFRGMSM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-213)


  Protein structure



No available structure.




Host bacterium

ID   3143 GenBank   NZ_RRLY01000080
Plasmid name   FWSEC0348|unnamed2 Incompatibility group   Col156
Plasmid size   6803 bp Coordinate of oriT [Strand]   996..1171 [+]
Host baterium   Escherichia coli strain FWSEC0348

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -