Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102696 |
| Name | oriT_FWSEC0111|unnamed2  |
| Organism | Escherichia coli strain FWSEC0111 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_RRGC01000114 (2386..2560 [-], 175 nt) |
| oriT length | 175 nt |
| IRs (inverted repeats) | 101..106, 120..125 (ACAATC..GATTGT) 47..52, 58..63 (AGTTTA..TAAACT) 46..51, 54..59 (TAGTTT..AAACTA) |
| Location of nic site | 65..66 |
| Conserved sequence flanking the nic site |
ACTGGCATAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 175 nt
>oriT_FWSEC0111|unnamed2
GTGACTCCGTGCGCGGCAAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTAAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGACAGAAAACGGCAAAAAGGCATTACGGCAGAA
GTGACTCCGTGCGCGGCAAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTAAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGACAGAAAACGGCAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1986 | GenBank | WP_032330985 |
| Name | mobQ_C9Z61_RS24880_FWSEC0111|unnamed2 |
UniProt ID | _ |
| Length | 739 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 739 a.a. Molecular weight: 84360.33 Da Isoelectric Point: 7.9435
>WP_032330985.1 MobQ family relaxase [Escherichia coli]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLTHDYTRKRGVDDAVILTPENAPSWCADRSVLW
NAVEKAEQRRDSQLAREIELAIPREISRDAARETVLAFVRENFVSQGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKSACAM
EKRGMETERGEQNRLINSLNLEIQVSRTQLALRKVQETQRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASILSELPLMTWA
EPEYRKRQLRFWKLGKQIESLSRTYRAVKERDIPDRRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQGVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDITADAVPEQLMPVVFSREGNSRTLNLLLCKGPEEVLVGFVRQED
GLRPVLALPSPDYSHLIVSTITENGVCLAGYGEAINHDADTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHFRGMSM
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLTHDYTRKRGVDDAVILTPENAPSWCADRSVLW
NAVEKAEQRRDSQLAREIELAIPREISRDAARETVLAFVRENFVSQGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKSACAM
EKRGMETERGEQNRLINSLNLEIQVSRTQLALRKVQETQRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASILSELPLMTWA
EPEYRKRQLRFWKLGKQIESLSRTYRAVKERDIPDRRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQGVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDITADAVPEQLMPVVFSREGNSRTLNLLLCKGPEEVLVGFVRQED
GLRPVLALPSPDYSHLIVSTITENGVCLAGYGEAINHDADTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHFRGMSM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 3139 | GenBank | NZ_RRGC01000114 |
| Plasmid name | FWSEC0111|unnamed2 | Incompatibility group | - |
| Plasmid size | 6756 bp | Coordinate of oriT [Strand] | 2386..2560 [-] |
| Host baterium | Escherichia coli strain FWSEC0111 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |