Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 102688 |
Name | oriT_pNB04-4 |
Organism | Klebsiella pneumoniae strain NB04 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP091989 (3951..4000 [+], 50 nt) |
oriT length | 50 nt |
IRs (inverted repeats) | 6..12, 15..21 (CAAAATT..AATTTTG) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 50 nt
>oriT_pNB04-4
ATCTTCAAAATTTTAATTTTGCGTGGGGTGTGGGTATTTTTAGTGGTGAG
ATCTTCAAAATTTTAATTTTGCGTGGGGTGTGGGTATTTTTAGTGGTGAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 3132 | GenBank | NZ_CP091989 |
Plasmid name | pNB04-4 | Incompatibility group | Col440I |
Plasmid size | 4510 bp | Coordinate of oriT [Strand] | 3951..4000 [+] |
Host baterium | Klebsiella pneumoniae strain NB04 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |