Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102687 |
| Name | oriT1_pNB04-3  |
| Organism | Klebsiella pneumoniae strain NB04 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP091988 (712..763 [-], 52 nt) |
| oriT length | 52 nt |
| IRs (inverted repeats) | 7..14, 17..24 (GCAAAATT..AATTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 52 nt
>oriT1_pNB04-3
AAATCTGCAAAATTTTAATTTTGCGTGGGGTGTGGATATTTTTAGTGGTGAG
AAATCTGCAAAATTTTAATTTTGCGTGGGGTGTGGATATTTTTAGTGGTGAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 3131 | GenBank | NZ_CP091988 |
| Plasmid name | pNB04-3 | Incompatibility group | Col440I |
| Plasmid size | 7890 bp | Coordinate of oriT [Strand] | 712..763 [-]; 4492..4540 [-] |
| Host baterium | Klebsiella pneumoniae strain NB04 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |