Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102685 |
| Name | oriT_FWSEC0121|unnamed2  |
| Organism | Escherichia coli strain FWSEC0121 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_RRGM01000182 (4510..4685 [+], 176 nt) |
| oriT length | 176 nt |
| IRs (inverted repeats) | 102..107, 121..126 (ACAATC..GATTGT) |
| Location of nic site | 66..67 |
| Conserved sequence flanking the nic site |
ACTGGCATAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 176 nt
>oriT_FWSEC0121|unnamed2
TGTGACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTGCAAAACCGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTTCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACGGCAAAAAGGCATTACGGCAGAA
TGTGACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTGCAAAACCGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTTCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACGGCAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1982 | GenBank | WP_136787933 |
| Name | mobQ_C9Z71_RS26875_FWSEC0121|unnamed2 |
UniProt ID | _ |
| Length | 721 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 721 a.a. Molecular weight: 82058.97 Da Isoelectric Point: 8.2765
>WP_136787933.1 MobQ family relaxase, partial [Escherichia coli]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLTHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAARETVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTQLALRTVQEAQRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFLAMSGKVNDIEREGNALLKEQAILEKEMTGLKKARPVASLLSEIPLMTWA
EPEYRKRQLRFWKLGKQIESLRRTYRAVKERDIPARRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITEMGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPRSVHDPVNVYLSPGGAVMVTDIHAGRPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSNDRRPVASPLPSAHRVDITADAAPEQLMPVVFSREGNSRTLNLLLCKGPEEMLVGFVRREG
GFCPVLVLPSPDYSHLMVSTITENGVCLAGYGEAINHDEDTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRD
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLTHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAARETVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTQLALRTVQEAQRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFLAMSGKVNDIEREGNALLKEQAILEKEMTGLKKARPVASLLSEIPLMTWA
EPEYRKRQLRFWKLGKQIESLRRTYRAVKERDIPARRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITEMGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPRSVHDPVNVYLSPGGAVMVTDIHAGRPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSNDRRPVASPLPSAHRVDITADAAPEQLMPVVFSREGNSRTLNLLLCKGPEEMLVGFVRREG
GFCPVLVLPSPDYSHLMVSTITENGVCLAGYGEAINHDEDTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 3129 | GenBank | NZ_RRGM01000182 |
| Plasmid name | FWSEC0121|unnamed2 | Incompatibility group | Col156 |
| Plasmid size | 6850 bp | Coordinate of oriT [Strand] | 4510..4685 [+] |
| Host baterium | Escherichia coli strain FWSEC0121 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |