Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102633
• Name: oriT_pUMNturkey4_IncX
• Organism: Escherichia coli strain UMNturkey4
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_JRPZ01000020 (5006..5505 [-], 500 nt)
• oriT length: 500 nt
• IRs (inverted repeats): 425..430, 434..439 (CCAATG..CATTGG) 124..130, 132..138 (TTTATCA..TGATAAA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 500 nt

>oriT_pUMNturkey4_IncX
TACTGCGATGCAGGATAGGGCAAACGCCGTAAAATGACGTCTTTGACGTTATTTTTCAGCGCTTGCCCGGTGACCTACAGTCGGTTCTTGTTGGGAGATTTTATGAAGTTTATAGTAAAGGATTTTATCAGTGATAAATATGCAAAGGCTATTAACATTTTAAATGATAACCTTAAAGAAAACTACTATGTTTTTTATGGTGTAAGGTTAAGTGAAATTCTTTTTCCTGCAAGTGATTATGGTACAGATGATTTTTTTAAGGAGTTTGAGGAAATAAACAACGTTACCTTGCCTTTAGTTGTTTTTGAAATAAATGAACGTGAACCTGTGATTGTAATTGGTTTTGATGAAATAAATGGTGCGATTCTTATAGAGAAATCCGGTATAAAGGTTTTAGTAATCGATAATCTATCGGCGTTGCTGACCAATGAAACATTGGGTGTCTTCTTCAAGTAACAGATCTAGCTGAAAATCGTCATCAAAACTGTGCACCTTATCTG

oriT secondary structure

Predicted by RNAfold.

Host bacterium

• ID: 3077
• GenBank: NZ_JRPZ01000020
• Plasmid name: pUMNturkey4_IncX
• Incompatibility group: -
• Plasmid size: 5505 bp
• Coordinate of oriT [Strand]: 5006..5505 [-]
• Host baterium: Escherichia coli strain UMNturkey4

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -