Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102631
Name   oriT_pUMNturkey6_12 in_silico
Organism   Escherichia coli strain UMNturkey6
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JRQB01000033 (2186..2230 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pUMNturkey6_12
GCGCACCGTTTCTGAACAAAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1958 GenBank   WP_023281056
Name   mobA_LS42_RS14515_pUMNturkey6_12 insolico UniProt ID   _
Length   371 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 371 a.a.        Molecular weight: 42815.62 Da        Isoelectric Point: 6.6451

>WP_023281056.1 MULTISPECIES: mobilization protein MobA [Gammaproteobacteria]
MASYHLSVRTGGKGNASPHADYISREGKYARKKDADLEHKEAGNMPAWAAHNPSEFWKAADAFERANGCT
YREIEIALPRELNPAQRLELVRAFVSQEIGDRHAYQFAIHNPTAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANSKVPERGGAKKVRFGETPTERKEHLIAQRERWADLQNAYLERYQHADRVDARSLKAQGIGRE
PERHLGAGQVQRFDTDQLQAILERREAERQVQQCCDERDSVIDVTTSLREAISERDTLMLKQTQKSDPEQ
DAVSGRVFDFEKEPEKLNALVSDAMKDIQEEIDLQSLVNDAMAEFQEIHQEMERQKERARLAEKQRQQEK
ERQRIAEQKRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(22-218)


  Protein structure



No available structure.




Host bacterium

ID   3075 GenBank   NZ_JRQB01000033
Plasmid name   pUMNturkey6_12 Incompatibility group   ColE10
Plasmid size   12282 bp Coordinate of oriT [Strand]   2186..2230 [+]
Host baterium   Escherichia coli strain UMNturkey6

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -