Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102630
• Name: oriT_pUMNturkey6_IncX
• Organism: Escherichia coli strain UMNturkey6
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_JRQB01000027 (2451..2983 [+], 533 nt)
• oriT length: 533 nt
• IRs (inverted repeats): 458..463, 467..472 (CCAATG..CATTGG) 157..163, 165..171 (TTTATCA..TGATAAA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 533 nt

>oriT_pUMNturkey6_IncX
AGATCTATGGATGTTGAGAATGTAGTATGGTTATACTGCGATGCAGGATAGGGCAAACGCCGTAAAATGACGTCTTTGACGTTATTTTTCAGCGCTTGCCCGGTGACCTACAGTCGGTTCTTGTTGGGAGATTTTATGAAGTTTATAGTAAAGGATTTTATCAGTGATAAATATGCAAAGGCTATTAACATTTTAAATGATAACCTTAAAGAAAACTACTATGTTTTTTATGGTGTAAGGTTAAGTGAAATTCTTTTTCCTGCAAGTGATTATGGTACAGATGATTTTTTTAAGGAGTTTGAGGAAATAAACAACGTTACCTTGCCTTTAGTTGTTTTTGAAATAAATGAACGTGAACCTGTGATTGTAATTGGTTTTGATGAAATAAATGGTGCGATTCTTATAGAGAAATCCGGTATAAAGGTTTTAGTAATCGATAATCTATCGGCGTTGCTGACCAATGAAACATTGGGTGTCTTCTTCAAGTAACAGATCTAGCTGAAAATCGTCATCAAAACTGTGCACCTTATCTG

oriT secondary structure

Predicted by RNAfold.

Host bacterium

• ID: 3074
• GenBank: NZ_JRQB01000027
• Plasmid name: pUMNturkey6_IncX
• Incompatibility group: IncX2
• Plasmid size: 9245 bp
• Coordinate of oriT [Strand]: 2451..2983 [+]
• Host baterium: Escherichia coli strain UMNturkey6

Cargo genes

• Drug resistance gene: blaTEM-1B
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -