Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102629 |
| Name | oriT_pUMNturkey6_5  |
| Organism | Escherichia coli strain UMNturkey6 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JRQB01000023 (783..842 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pUMNturkey6_5
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1957 | GenBank | WP_047415764 |
| Name | Relaxase_LS42_RS29210_pUMNturkey6_5 |
UniProt ID | _ |
| Length | 498 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 498 a.a. Molecular weight: 54943.37 Da Isoelectric Point: 9.1223
>WP_047415764.1 relaxase/mobilization nuclease domain-containing protein [Escherichia coli]
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYAKKYTSGVLSFAEKDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGKGLRAEIESAAAEYRRDAESRIQRARKVCQSGTERKREENQRR
HPRPRPEAVLSHEPAHERHGAYGQPDVADHRPGVCTADSIGRKHSVVAGAADTRQLHDHPGAEAHAGHAV
REEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERSAAPVVEKLNSIEAHRQQERAAQHQKTLELERSQR
QKGFELGM
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYAKKYTSGVLSFAEKDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGKGLRAEIESAAAEYRRDAESRIQRARKVCQSGTERKREENQRR
HPRPRPEAVLSHEPAHERHGAYGQPDVADHRPGVCTADSIGRKHSVVAGAADTRQLHDHPGAEAHAGHAV
REEQRRAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKTVAERIRAATAGLLEKAGRVGE
RLRGMADDVWSYATGERGAERARHGLEQAGAEFERSAAPVVEKLNSIEAHRQQERAAQHQKTLELERSQR
QKGFELGM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 783 | GenBank | WP_001347450 |
| Name | WP_001347450_pUMNturkey6_5 |
UniProt ID | E1JFY2 |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11755.49 Da Isoelectric Point: 7.8963
>WP_001347450.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSLSPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSLSPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | E1JFY2 |
Host bacterium
| ID | 3073 | GenBank | NZ_JRQB01000023 |
| Plasmid name | pUMNturkey6_5 | Incompatibility group | Col440II |
| Plasmid size | 5043 bp | Coordinate of oriT [Strand] | 783..842 [+] |
| Host baterium | Escherichia coli strain UMNturkey6 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |