Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102628
Name   oriT_pUMNturkey6_10 in_silico
Organism   Escherichia coli strain UMNturkey6
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JRQB01000019 (574..618 [-], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pUMNturkey6_10
GCGCACCGTTTCTGAACGGAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1956 GenBank   WP_000179383
Name   MobA_MobL_LS42_RS09080_pUMNturkey6_10 insolico UniProt ID   _
Length   364 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 364 a.a.        Molecular weight: 42172.85 Da        Isoelectric Point: 6.7866

>WP_000179383.1 MobA/MobL family protein [Escherichia coli]
MASYHLSVKTGGKGKAASHADYIAREGKYAREKDNDLEHQESGNMPAWAAHKPSEFWKAADTFERANGCT
YREIEIALPREFTPAQRLELVRDFVQQEIGDRHAYQFAIHNPRAAIEGGEQPHAHIMFSERLNDGIERDP
QPYFKRANTKNPERGGAKKVRFGETPTERKAYLIAQRERWADLQNKHLERYQHIDRVDARSLKAQGIERE
PERHFGAGQVRQFEPAQLHALMERREAERQAQHCRDECNSVIDVTTTLREALSERDNLTLKHEQTSEPQL
KATSDKAFDFEKESDKLNALVSDAMKDIQEEIDLQTLVNDAMAEFQGIHQDMVKAEQQRQQEKERQRLAE
QKRQKSDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   3072 GenBank   NZ_JRQB01000019
Plasmid name   pUMNturkey6_10 Incompatibility group   ColE10
Plasmid size   10120 bp Coordinate of oriT [Strand]   574..618 [-]
Host baterium   Escherichia coli strain UMNturkey6

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -