Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102621
• Name: oriT_pUMNturkey5_IncX
• Organism: Escherichia coli strain UMNturkey5
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_JRQA01000080 (29280..29812 [-], 533 nt)
• oriT length: 533 nt
• IRs (inverted repeats): 458..463, 467..472 (CCAATG..CATTGG) 157..163, 165..171 (TTTATCA..TGATAAA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 533 nt

>oriT_pUMNturkey5_IncX
AGATCTATGGATGTTGAGAATGTAGTATGGTTATACTGCGATGCAGGATAGGGCAAACGCCGTAAAATGACGTCTTTGACGTTATTTTTCAGCGCTTGCCCGGTGACCTACAGTCGGTTCTTGTTGGGAGATTTTATGAAGTTTATAGTAAAGGATTTTATCAGTGATAAATATGCAAAGGCTATTAACATTTTAAATGATAACCTTAAAGAAAACTACTATGTTTTTTATGGTGTAAGGTTAAGTGAAATTCTTTTTCCTGCAAGTGATTATGGTACAGATGATTTTTTTAAGGAGTTTGAGGAAATAAACAACGTTACCTTGCCTTTAGTTGTTTTTGAAATAAATGAACGTGAACCTGTGATTGTAATTGGTTTTGATGAAATAAATGGTGCGATTCTTATAGAGAAATCCGGTATAAAGGTTTTAGTAATCGATAATCTATCGGCGTTGCTGACCAATGAAACATTGGGTGTCTTCTTCAAGTAACAGATCTAGCTGAAAATCGTCATCAAAACTGTGCACCTTATCTG

oriT secondary structure

Predicted by RNAfold.

Host bacterium

• ID: 3065
• GenBank: NZ_JRQA01000080
• Plasmid name: pUMNturkey5_IncX
• Incompatibility group: IncN
• Plasmid size: 32940 bp
• Coordinate of oriT [Strand]: 29280..29812 [-]
• Host baterium: Escherichia coli strain UMNturkey5

Cargo genes

• Drug resistance gene: formA, blaTEM-1B
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -