Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102619
Name   oriT_pUMNturkey5_12 in_silico
Organism   Escherichia coli strain UMNturkey5
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JRQA01000040 (7064..7108 [+], 45 nt)
oriT length   45 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 45 nt

>oriT_pUMNturkey5_12
GCGCACCGTTTCTGAACAAAGTGAAGAAACGTCTAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1952 GenBank   WP_023281056
Name   mobA_LS41_RS20410_pUMNturkey5_12 insolico UniProt ID   _
Length   371 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 371 a.a.        Molecular weight: 42815.62 Da        Isoelectric Point: 6.6451

>WP_023281056.1 MULTISPECIES: mobilization protein MobA [Gammaproteobacteria]
MASYHLSVRTGGKGNASPHADYISREGKYARKKDADLEHKEAGNMPAWAAHNPSEFWKAADAFERANGCT
YREIEIALPRELNPAQRLELVRAFVSQEIGDRHAYQFAIHNPTAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANSKVPERGGAKKVRFGETPTERKEHLIAQRERWADLQNAYLERYQHADRVDARSLKAQGIGRE
PERHLGAGQVQRFDTDQLQAILERREAERQVQQCCDERDSVIDVTTSLREAISERDTLMLKQTQKSDPEQ
DAVSGRVFDFEKEPEKLNALVSDAMKDIQEEIDLQSLVNDAMAEFQEIHQEMERQKERARLAEKQRQQEK
ERQRIAEQKRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(22-218)


  Protein structure



No available structure.




Host bacterium

ID   3063 GenBank   NZ_JRQA01000040
Plasmid name   pUMNturkey5_12 Incompatibility group   ColE10
Plasmid size   12228 bp Coordinate of oriT [Strand]   7064..7108 [+]
Host baterium   Escherichia coli strain UMNturkey5

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -