Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102611 |
| Name | oriT_B86|unnamed scaffold_33  |
| Organism | Klebsiella pneumoniae strain B86 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LJCD01000034 (1183..1240 [-], 58 nt) |
| oriT length | 58 nt |
| IRs (inverted repeats) | 29..36, 39..46 (CACAGCGT..ACGCTGTG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 58 nt
>oriT_B86|unnamed scaffold_33
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACAGCGTTTACGCTGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACAGCGTTTACGCTGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 3055 | GenBank | NZ_LJCD01000034 |
| Plasmid name | B86|unnamed scaffold_33 | Incompatibility group | ColRNAI |
| Plasmid size | 5847 bp | Coordinate of oriT [Strand] | 1183..1240 [-] |
| Host baterium | Klebsiella pneumoniae strain B86 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |