Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102607
• Name: oriT_S3_VPH_Chula|unnamed5
• Organism: Salmonella enterica strain S3_VPH_Chula
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_JASBCK010000014 (450..483 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_S3_VPH_Chula|unnamed5
ACGATTTTGCGTAGCAAAGTCTAGTGAGTACACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_QAT88_RS24865_S3_VPH_Chula|unnamed5

• ID: 1946
• GenBank: WP_089622504
• Name: mobV_QAT88_RS24865_S3_VPH_Chula|unnamed5
• UniProt ID: _
• Length: 338 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 338 a.a.
• Molecular weight: 38503.52 Da
• Isoelectric Point: 10.0541

>WP_089622504.1 MULTISPECIES: MobV family relaxase [Enterobacteriaceae]
MRSPDWLDGRQNEGVSMANYAIMRCKKLTGMGSVASALQHCYRERETPNADAERTPENHCSVSQSADEAM
GKLRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFAHSEQWLEKKYGKDRVVAAVVHRDEATP
HLSAFVVPLTQDGRLSAKEFIGGRSKMRDDQSTYAESVKKLGLERGIEGSRATHQTVQHYYESINRGTRS
QVSISPEALEPRVLRKGIFTKDVEDQAAIAKRLSHAVNDGFAGTIAMASQSAQNAKRARELQKTMDSQQK
RLQSVTEPFKGLSREQMTEILMMAQRFKQQNQEKEKQQRVEREKQRQMRSRGMGGMER

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (17-201)

Protein structure

No available structure.

Host bacterium

• ID: 3051
• GenBank: NZ_JASBCK010000014
• Plasmid name: S3_VPH_Chula|unnamed5
• Incompatibility group: -
• Plasmid size: 2046 bp
• Coordinate of oriT [Strand]: 450..483 [+]
• Host baterium: Salmonella enterica strain S3_VPH_Chula

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -