Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102587 |
| Name | oriT_FWSEC0381|unnamed4  |
| Organism | Escherichia coli strain FWSEC0381 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_RRNF01000139 (3274..3449 [+], 176 nt) |
| oriT length | 176 nt |
| IRs (inverted repeats) | 102..107, 121..126 (ACAATC..GATTGT) |
| Location of nic site | 66..67 |
| Conserved sequence flanking the nic site |
ACTGGCATAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 176 nt
>oriT_FWSEC0381|unnamed4
TGTGACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTGCAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGACAGAAAACGGCAAAAAGGCATTACGGCAGAA
TGTGACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTGCAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGACAGAAAACGGCAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1935 | GenBank | WP_136761829 |
| Name | mobQ_C9157_RS26355_FWSEC0381|unnamed4 |
UniProt ID | _ |
| Length | 739 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 739 a.a. Molecular weight: 84410.48 Da Isoelectric Point: 8.5504
>WP_136761829.1 MobQ family relaxase [Escherichia coli]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDERTGLTHDYTRKRGVDDAVILTPENAPSWCADRSVLW
NAVEKAEQRRDSQLAREIELAIPREISRDAARETVLAFVRENFVSQGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKSACAM
EKRGMETERGEKNRLINSLNLEIQVSRTQLALRKVQETQRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASILSELPLMTWA
EPEYRKRQLRFWKLGKQIESLSRTYRAVKERDIPARRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEVLVGFVRQED
GLRPVLALPSPDYSHLIVSTITENGVCLAGYGEAINHDADTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHFRGMSM
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDERTGLTHDYTRKRGVDDAVILTPENAPSWCADRSVLW
NAVEKAEQRRDSQLAREIELAIPREISRDAARETVLAFVRENFVSQGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKSACAM
EKRGMETERGEKNRLINSLNLEIQVSRTQLALRKVQETQRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFVAMNGKANDIKREGNALVKERDILEKEMTGLRKARPVASILSELPLMTWA
EPEYRKRQLRFWKLGKQIESLSRTYRAVKERDIPARRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDVTAYAAPEQLMPVVFSTERNSRTLNLLLCKGPEEVLVGFVRQED
GLRPVLALPSPDYSHLIVSTITENGVCLAGYGEAINHDADTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHFRGMSM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 3031 | GenBank | NZ_RRNF01000139 |
| Plasmid name | FWSEC0381|unnamed4 | Incompatibility group | - |
| Plasmid size | 5732 bp | Coordinate of oriT [Strand] | 3274..3449 [+] |
| Host baterium | Escherichia coli strain FWSEC0381 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |