Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102522
Name   oriT_pSM144A_Rh02 in_silico
Organism   Rhizobium leguminosarum strain SM144A
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_SIPA01000003 (327079..327107 [+], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      14..19, 24..29  (CGTCGC..GCGACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pSM144A_Rh02
AGGGCGCAATATACGTCGCTGTCGCGACG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1873 GenBank   WP_130741221
Name   traA_ELI01_RS27480_pSM144A_Rh02 insolico UniProt ID   _
Length   986 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 986 a.a.        Molecular weight: 109119.80 Da        Isoelectric Point: 6.4584

>WP_130741221.1 Ti-type conjugative transfer relaxase TraA, partial [Rhizobium leguminosarum]
MAIMFVRAQVISRGAGRSIVSAAAYRHRARMMDEQAGTSFSYRGGASELVHEELALPDQTPDWLRAAIDG
RSVAAASEALWNAVDAFEKRADAQLARELIIALPEELTRAENIGLVREFVRDNLTSKGMVADWVYHDKDG
NPHIHLMTTLRPLTQEGFGRKKVAVTGEDGAPLRVVTPDRPKGRIVYKLWAGDKETMKAWKIAWAETANR
HLALAGHEIRLDGRSYAEQGLDGIAQKHLGPEKAALSRRGAEMYFAPADLARRQEMADRLLAEPALLLKQ
LSNERSTFDERDIAKALHRTVDDPLDFANIRARLMASDDLIMLKPQQVDTETGKAAEPAVFTTRDILRIE
YDMARSAQVLSERRGFAVSAESLAAAIESVETADPEKSFRLDPEQVDAVRHVTRDNGIAAVVGLAGAGKS
TLLAAARVAWESGGSRVIGAALAGKAAEGLEDSSGIRSRTLASWELIWANGHETLHRGDVVVVDEAGMVS
SQQMARLLKLVEQAGAKVVLVGDAMQLQPIQAGAAFRAITERIGFAELAGVRRQRQQWAREASRLFARGE
IENGLDAYAQQGHLIEAGTRAETIDRIVADWSEARKRAIETAALKGNDGRLRGDELLVLAHTNQDVKRLN
EALRSVMTGEGALGENRSFQTERGGREFAAGDRIIFLENSRFLEPRAPRLGPQYVKNGMLGTVVSTGDKR
GDTLLSVRLDNGRDVVISEDSYRNVDHGYAATIHKSQGSTVERTLVLATGMMDQHLTYVSMTRHRDRADL
YAAKEDFEAKPEWGRKPRVDHTAGVTGELVETGQAKFRPNDEDADDSPYADVKTEDGSVHRLWGVSLPKA
LEEGGVSEGDTVTLRKDGVERVKVQVAIVDEQTGQKRFEEREVERNVWTAKRIETAAERQQRIERESHRP
ELFKQLVERLSRSGAKTTTLDFESEAGYRQYADDFARRRGLDHLSQTAAGMEEGVSRRWVWIAEKREQLA
GLWERA

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-249)

AAA domain (AAA_30)

(391-576)


  Protein structure



No available structure.




Host bacterium

ID   2966 GenBank   NZ_SIPA01000003
Plasmid name   pSM144A_Rh02 Incompatibility group   -
Plasmid size   330089 bp Coordinate of oriT [Strand]   327079..327107 [+]
Host baterium   Rhizobium leguminosarum strain SM144A

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   actP
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA9