Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102514
• Name: oriT_p4277BB
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain UT_4277_BB
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_MAUA01000061 (1332..1367 [-], 36 nt)
• oriT length: 36 nt
• IRs (inverted repeats): 15..22, 29..36 (AAAGTATA..TATACTTT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 36 nt

>oriT_p4277BB
CACTTTTACGAAGTAAAGTATAGTGCGTTATACTTT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_BBG02_RS10905_p4277BB

• ID: 1865
• GenBank: WP_142324378
• Name: mobV_BBG02_RS10905_p4277BB
• UniProt ID: _
• Length: 398 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 398 a.a.
• Molecular weight: 46510.30 Da
• Isoelectric Point: 5.8467

>WP_142324378.1 MobV family relaxase, partial [Streptococcus dysgalactiae]
MSYLVARMQKMKAGNLGGAYKHNERIFETHSNKDIDPSRSHLNYELTVRDRSVSYEKQIKDYVNENKISN
RAIRKDAVLCDEWIITSDKPFFEKLSEEETREFFETAKNYFAENYGLENIAYASVHLDESTPHMHMGVVP
FQDGKLSSKAMFDKEELKKIQEDLPKYMNEHGFELSRGQLGSDRKHLSVADYKAKIGEKALNKELLGLGA
PQYWHREEDRSATTEEISGFESLSSLFSEEEFKIREATLEERFKWLDNHRNDLKGDLSRLEGLVDKKVEE
YTKIDSKTSERLSELFGLETSIKYREKELKGLESNSERLSDKVVRLEKEHREMTQLLVEQNRNLRKISFQ
DLDRRRIAEDLHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 2958
• GenBank: NZ_MAUA01000061
• Plasmid name: p4277BB
• Incompatibility group: -
• Plasmid size: 4860 bp
• Coordinate of oriT [Strand]: 1332..1367 [-]
• Host baterium: Streptococcus dysgalactiae subsp. equisimilis strain UT_4277_BB

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -