Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102482
Name   oriT_INSLA289|unnamed INSLA289_contig_33 in_silico
Organism   Escherichia coli strain INSLA289
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LHAT01000033 (324..501 [+], 178 nt)
oriT length   178 nt
IRs (inverted repeats)      104..109, 123..128  (ACAATC..GATTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 178 nt

>oriT_INSLA289|unnamed INSLA289_contig_33
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGAAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACCACAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1847 GenBank   WP_052908532
Name   mobQ_AKG99_RS13755_INSLA289|unnamed INSLA289_contig_33 insolico UniProt ID   _
Length   719 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 719 a.a.        Molecular weight: 81870.28 Da        Isoelectric Point: 8.9259

>WP_052908532.1 MobQ family relaxase [Escherichia coli]
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNNRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEPARRMADLLNIGLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFASGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQTAFETQWQQWGASGLAALRAQLLKREEELRRKEQEDTERRRAE
RRAEQLRQNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTSYLLLHNRNGEYTLWGNELEKYRTRIFERVDL
MRDRSGYICDRSEIGQHPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPEFFCLGEDRQPAMPSL
AARKVDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNSTLYPAFAVPSADNRHLVISA
LTDKGLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEWRR
EEDARTHATERRRDRGWSQ

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-213)


  Protein structure



No available structure.




Host bacterium

ID   2926 GenBank   NZ_LHAT01000033
Plasmid name   INSLA289|unnamed INSLA289_contig_33 Incompatibility group   Col8282
Plasmid size   4053 bp Coordinate of oriT [Strand]   324..501 [+]
Host baterium   Escherichia coli strain INSLA289

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -