Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102480 |
| Name | oriT_FWSEC0078|unnamed2  |
| Organism | Escherichia coli strain FWSEC0078 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_RREX01000178 (3141..3424 [-], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 247..253, 262..268 (CCCCTGG..CCAGGGG) 245..250, 253..258 (CGCCCC..GGGGCG) 119..127, 137..145 (GCGGTGTTG..CAACACCGC) 31..38, 41..48 (GCAAAAAC..GTTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT_FWSEC0078|unnamed2
GTTCTCATTCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTTGGCGCAGCTACAACACCGCGCCGACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATCTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
GTTCTCATTCCTGAAATGCCCACACCCCACGCAAAAACAAGTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTTGGCGCAGCTACAACACCGCGCCGACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATCTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2924 | GenBank | NZ_RREX01000178 |
| Plasmid name | FWSEC0078|unnamed2 | Incompatibility group | ColRNAI |
| Plasmid size | 3750 bp | Coordinate of oriT [Strand] | 3141..3424 [-] |
| Host baterium | Escherichia coli strain FWSEC0078 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |