Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102445
Name   oriT_SMG009F5|unnamed1 in_silico
Organism   Escherichia coli strain SMG009F5
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JALEBU010000013 (5202..5485 [+], 284 nt)
oriT length   284 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 284 nt

>oriT_SMG009F5|unnamed1
GGTTATTGCTGCTTTCTGCCGATAACAGTGCAAGTTTTGCGATTTTTTTAAGCGCTTCACAGTTCGTTAGCAAGCTCAGTTTTTTTGATAAAATTCTGGTCAGTTTGTTTAAAAAGTGTTACAAGTAAGGCGAATGGTTGAATGGTTAGTTTTAAGACTCAAATCGGCAGTATTAAAATTCCAAAAGTAGCTTTTCATACTTCAAAAAACCAAACTTTAATTTCATGTAGAAGAGTTGTACTATTGTATTGACTCAAGGACAATCCGACATGTCAGAATCAGAT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1829 GenBank   WP_050488025
Name   TraI_2_MRT07_RS21650_SMG009F5|unnamed1 insolico UniProt ID   _
Length   306 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 306 a.a.        Molecular weight: 35343.65 Da        Isoelectric Point: 6.6903

>WP_050488025.1 TraI domain-containing protein [Escherichia coli]
MNFRAIFLSMQRVLGIFSRRENDVVELIKQDPSSLSPFAQIVGDQKYTVPDHPNLEVLKFIEYPTRPAGI
QTFNEQSILSLYRDKLHSISMMLAISDGDIREDAFTFTNLVLKPLIGYIRWIHLLPASENHHHNGIGGLL
SHSLEVAMISLKNANHSELRPIGYQDEEVIRRKVYLYAAFICGLVHDAGKVYDIDIVSLNLSKTLTWAPS
SQSLLDWARENNVVEYEIHWRKRIHNQHNIWSSVFLERILDPVCMSFLDRVKKERVYAKMVTALNVYNDG
GNDSNLLIVFYVQIMPDDFVMQLHQF

  Protein domains


Predicted by InterproScan.

Putative helicase (TraI_2)

(106-274)


  Protein structure



No available structure.




Host bacterium

ID   2889 GenBank   NZ_JALEBU010000013
Plasmid name   SMG009F5|unnamed1 Incompatibility group   IncHI1B
Plasmid size   84634 bp Coordinate of oriT [Strand]   5202..5485 [+]
Host baterium   Escherichia coli strain SMG009F5

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -