Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102394 |
| Name | oriT_FWSEC0352|unnamed2  |
| Organism | Escherichia coli strain FWSEC0352 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_RRMC01000078 (6041..6216 [-], 176 nt) |
| oriT length | 176 nt |
| IRs (inverted repeats) | 102..107, 121..126 (ACAATC..GATTGT) |
| Location of nic site | 66..67 |
| Conserved sequence flanking the nic site |
ACTGGCATAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 176 nt
>oriT_FWSEC0352|unnamed2
TGTGACTCCGTGCGCGGTGAAAAATCGCATTTTATCGCGTCACTGGTAGTTGCAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTTCGTTTCGATTGTGTGCGGTCTGCGACGCTAAAAGAAAACGGCAAAAAGGCATTACGGCAGAA
TGTGACTCCGTGCGCGGTGAAAAATCGCATTTTATCGCGTCACTGGTAGTTGCAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTTCGTTTCGATTGTGTGCGGTCTGCGACGCTAAAAGAAAACGGCAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1800 | GenBank | WP_024224537 |
| Name | mobQ_C9128_RS24920_FWSEC0352|unnamed2 |
UniProt ID | _ |
| Length | 739 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 739 a.a. Molecular weight: 84322.58 Da Isoelectric Point: 8.0913
>WP_024224537.1 MobQ family relaxase [Escherichia coli]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAARETVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFLAMSGKVNDIEREGNALLKEQAILEKEMTGLKKARPVASLLSEIPLMTWA
EPEYRKRQLRFWKLGKQIESLRRTYRAVKEQDIPARRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSLGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDITADAVPEQLMPVVFSREGNSRTLNLLLCKGPEEMLVGFVRREG
GFCPVLVLPSPDYSHLIVSTITENGVCLAGYGEAINHDEDTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHFRGMSM
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAARETVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAVGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTRLAVIQVQENVRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFLAMSGKVNDIEREGNALLKEQAILEKEMTGLKKARPVASLLSEIPLMTWA
EPEYRKRQLRFWKLGKQIESLRRTYRAVKEQDIPARRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITELGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSLGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAHRVDITADAVPEQLMPVVFSREGNSRTLNLLLCKGPEEMLVGFVRREG
GFCPVLVLPSPDYSHLIVSTITENGVCLAGYGEAINHDEDTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPGHFRGMSM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 2838 | GenBank | NZ_RRMC01000078 |
| Plasmid name | FWSEC0352|unnamed2 | Incompatibility group | Col156 |
| Plasmid size | 6803 bp | Coordinate of oriT [Strand] | 6041..6216 [-] |
| Host baterium | Escherichia coli strain FWSEC0352 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |