Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102375 |
| Name | oriT_pCol440II  |
| Organism | Klebsiella pneumoniae strain BA31746 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JACWMP010000042 (392..449 [+], 58 nt) |
| oriT length | 58 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 58 nt
>oriT_pCol440II
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCT
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2819 | GenBank | NZ_JACWMP010000042 |
| Plasmid name | pCol440II | Incompatibility group | Col440II |
| Plasmid size | 4167 bp | Coordinate of oriT [Strand] | 392..449 [+] |
| Host baterium | Klebsiella pneumoniae strain BA31746 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |