Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102370 |
| Name | oriT_SA2010|unnamed1  |
| Organism | Staphylococcus aureus strain SA2010 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JACGYD010000014 (5505..5624 [+], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..58, 62..68 (TTGGGGA..TCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_SA2010|unnamed1
AGTGGCTAGCAATTAGCCACTATTTTTTCGCCAGAAAAAATCCTAAGGGGCTTGGGGAATATCCCCAACAAGCAGGCGATGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTAGCAATTAGCCACTATTTTTTCGCCAGAAAAAATCCTAAGGGGCTTGGGGAATATCCCCAACAAGCAGGCGATGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1790 | GenBank | WP_031862749 |
| Name | Relaxase_H4Q49_RS14930_SA2010|unnamed1 |
UniProt ID | _ |
| Length | 335 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 335 a.a. Molecular weight: 38789.62 Da Isoelectric Point: 7.9166
>WP_031862749.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQAFKPDEVTPE
QCNQLGLELAEKFAPNHQVAVYTHNDTDHVHNHIVINSINLETGKKFNNNKQALRDLRNFNDEVCRNHGL
SVPEKDTARLRYTQTEKAIADPNIKSTAQYSWKDEIREAIDQSQATNMDELKTHLSQYGIEIERVTPKSI
TYRHLAEDKKVRGRRLGENYNKGGIEDGFERQIQRRQQERDSEHDYQPKRRTSNRDESTERDTSITQSDW
DRFAKDTNELERSRKAAESARLAHEKARRDREERIQAERATRKNIDNDRDHGYEL
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQAFKPDEVTPE
QCNQLGLELAEKFAPNHQVAVYTHNDTDHVHNHIVINSINLETGKKFNNNKQALRDLRNFNDEVCRNHGL
SVPEKDTARLRYTQTEKAIADPNIKSTAQYSWKDEIREAIDQSQATNMDELKTHLSQYGIEIERVTPKSI
TYRHLAEDKKVRGRRLGENYNKGGIEDGFERQIQRRQQERDSEHDYQPKRRTSNRDESTERDTSITQSDW
DRFAKDTNELERSRKAAESARLAHEKARRDREERIQAERATRKNIDNDRDHGYEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 2814 | GenBank | NZ_JACGYD010000014 |
| Plasmid name | SA2010|unnamed1 | Incompatibility group | - |
| Plasmid size | 8161 bp | Coordinate of oriT [Strand] | 5505..5624 [+] |
| Host baterium | Staphylococcus aureus strain SA2010 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |