Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102362 |
| Name | oriT_Res13-Croi-PEB01-41|unnamed466  |
| Organism | Escherichia fergusonii strain Res13-Croi-PEB01-41 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JADAID010000136 (4202..4376 [-], 175 nt) |
| oriT length | 175 nt |
| IRs (inverted repeats) | 101..106, 120..125 (ACAATC..GATTGT) 46..51, 54..59 (CAGTTT..AAACTG) |
| Location of nic site | 65..66 |
| Conserved sequence flanking the nic site |
ACTGGCATAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 175 nt
>oriT_Res13-Croi-PEB01-41|unnamed466
GTAACTCCGTGCGCGATGAAAAATCGTATTTTATCGCGTCACTGGCAGTTTAAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACGACAAAAAGGCATTACGGCAGAA
GTAACTCCGTGCGCGATGAAAAATCGTATTTTATCGCGTCACTGGCAGTTTAAAAACTGAACTGGCATAATGCACGGCACATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACGACAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1786 | GenBank | WP_032347464 |
| Name | mobQ_IMO57_RS24015_Res13-Croi-PEB01-41|unnamed466 |
UniProt ID | A0A0F7JFN2 |
| Length | 719 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 719 a.a. Molecular weight: 81786.41 Da Isoelectric Point: 8.9615
>WP_032347464.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAEAWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNGGLTEPARRVANLLNIGLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWAASGLAALRAQLLKREEELRRKEQEDTERSRAE
RRAEQLRKNDNAVMDSGVLSAVVTGYGEAPMPGNWEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDL
MRDRSGYICDRSEIGQHPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSL
AARKVDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPTADNSQLVINA
LTDKGLRFAGYGEAVNHDADSPARPAPELMLFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEWQR
EEYARTRVSDRKHERGWLL
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAEAWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNGGLTEPARRVANLLNIGLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWAASGLAALRAQLLKREEELRRKEQEDTERSRAE
RRAEQLRKNDNAVMDSGVLSAVVTGYGEAPMPGNWEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDL
MRDRSGYICDRSEIGQHPPLQRVYSSATFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSL
AARKVDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPTADNSQLVINA
LTDKGLRFAGYGEAVNHDADSPARPAPELMLFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEWQR
EEYARTRVSDRKHERGWLL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0F7JFN2 |
Host bacterium
| ID | 2806 | GenBank | NZ_JADAID010000136 |
| Plasmid name | Res13-Croi-PEB01-41|unnamed466 | Incompatibility group | Col8282 |
| Plasmid size | 5093 bp | Coordinate of oriT [Strand] | 4202..4376 [-] |
| Host baterium | Escherichia fergusonii strain Res13-Croi-PEB01-41 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |