Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102361 |
| Name | oriT_Res13-Croi-PEB01-41|unnamed466  |
| Organism | Escherichia fergusonii strain Res13-Croi-PEB01-41 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JADAID010000135 (3270..3361 [-], 92 nt) |
| oriT length | 92 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 92 nt
>oriT_Res13-Croi-PEB01-41|unnamed466
GATGTAACTCCATGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAG
GATGTAACTCCATGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1785 | GenBank | WP_277950590 |
| Name | mobQ_IMO57_RS23995_Res13-Croi-PEB01-41|unnamed466 |
UniProt ID | _ |
| Length | 750 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 750 a.a. Molecular weight: 85048.10 Da Isoelectric Point: 8.7445
>WP_277950590.1 MULTISPECIES: MobQ family relaxase [Enterobacteriaceae]
MRTYTISTPFRLCAPCGAERKLQKGITAEMAIYHLSMKIISRSNGYSAVASAAYRSGSLMLDERTGLTHD
YTRKSGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPHELPQDAARETVLAFVRE
NFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGY
QKEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEPARR
VADLLNIGLPDNATSYTLRDIIEALPKDSNAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASL
KKSSPFSSGFSRIPLMQWAAPEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGESG
LAALRAQLLKREDELRRKELEDTERSRAERRAEQLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMTCYL
LLHNRNGEYTLWGNELEKYRTRIFESVDLIRDRSGYICDRSEIGQHPPLQRIYSSATFEQLLTQVCQTWP
QHTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDS
LGGVVRLNGTLYPAFAVPSADNSQLVISALTDKGLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPL
FAVVNTPEKQPDHLFRSLGFNRTWDEWRREEDARTHATERRPDRGWSQGM
MRTYTISTPFRLCAPCGAERKLQKGITAEMAIYHLSMKIISRSNGYSAVASAAYRSGSLMLDERTGLTHD
YTRKSGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPHELPQDAARETVLAFVRE
NFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGY
QKEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEPARR
VADLLNIGLPDNATSYTLRDIIEALPKDSNAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASL
KKSSPFSSGFSRIPLMQWAAPEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGESG
LAALRAQLLKREDELRRKELEDTERSRAERRAEQLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMTCYL
LLHNRNGEYTLWGNELEKYRTRIFESVDLIRDRSGYICDRSEIGQHPPLQRIYSSATFEQLLTQVCQTWP
QHTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVMSSVDRETRQLQLLLVMGVDDS
LGGVVRLNGTLYPAFAVPSADNSQLVISALTDKGLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPL
FAVVNTPEKQPDHLFRSLGFNRTWDEWRREEDARTHATERRPDRGWSQGM
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 2805 | GenBank | NZ_JADAID010000135 |
| Plasmid name | Res13-Croi-PEB01-41|unnamed466 | Incompatibility group | - |
| Plasmid size | 4074 bp | Coordinate of oriT [Strand] | 3270..3361 [-] |
| Host baterium | Escherichia fergusonii strain Res13-Croi-PEB01-41 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |