Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   102337
Name   oriT_KZN_INI_KINF_29|unnamed39 in_silico
Organism   Klebsiella pneumoniae strain KZN_INI_KINF_29
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_VOOF01000114 (34784..34811 [+], 28 nt)
oriT length   28 nt
IRs (inverted repeats)      16..21, 23..28  (ATCAGA..TCTGAT)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 28 nt

>oriT_KZN_INI_KINF_29|unnamed39
AGTTTGGTGCTTATGATCAGAATCTGAT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   2781 GenBank   NZ_VOOF01000114
Plasmid name   KZN_INI_KINF_29|unnamed39 Incompatibility group   IncHI1B
Plasmid size   84266 bp Coordinate of oriT [Strand]   34784..34811 [+]
Host baterium   Klebsiella pneumoniae strain KZN_INI_KINF_29

Cargo genes


Drug resistance gene   -
Virulence gene   iucA, iucB, iucC, iutA
Metal resistance gene   terE, terD, terC, terB, terA, terZ, terW
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -